Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29984 259 6e-64 seq17286 179 5e-40 seq11536 107 2e-18 >seq29984 Length=2719 Score = 259 bits (286), Expect = 6e-64 Identities = 779/1183 (66%), Gaps = 25/1183 (2%) Strand=Plus/Minus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || || || || ||||||||||| || ||| ||||| || ||||||||| | Sbjct 1785 TAGATAGTCTCGAAGATCTTCTTGTTAGCATCGGTAGCTTCTTCACTCTCAAATGGA-AT 1727 Query 62748 TTTAAGAGAATAA-ACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 ||| | | | | || || |||||||||||||||||||| || |||||||| | ||| Sbjct 1726 TTTCATTCTTTGATAAGCATCAGCTAATCCTTGAACACCAATTCCAATAGGTCTGTTTCT 1667 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 || || ||||||||| || || || ||||| ||| | || |||| | |||| | Sbjct 1666 AAAGTTCGAATATTCAGCTTCAGGGATTGGGTAATAGTTATTGTCAATAACTCTATTCAA 1607 Query 62867 ATTTCTGACAAT--TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-CGCC--CA 62921 ||| || ||| | ||| | || | | || || | |||| || | || || Sbjct 1606 ATTCTTGGTAATAGTCCTTGTAACAGAG--TGAAGCTTTTCATAATCGAAGACTCCTTCA 1549 Query 62922 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981 || | || ||| | || | || ||||||||| || || || ||||| | || | Sbjct 1548 TCATTGACGAACCTTACTAAAGAAATAGATGCCAGGTTGCAGACAGCTACTTGATCTTTA 1489 Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 || | ||||| || | |||| ||||||||| | ||||||||||| | ||| ||| Sbjct 1488 TCAGTATATTCCATAACCTCACAGCAAAGATTCGAGCTTTTGATAGTTCCAAGATTCTGT 1429 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 |||||| || ||||| | |||||||| || ||| ||||| || || |||||| Sbjct 1428 TGATTAGATTTCTTGTTGGCAGAGTCCTTATAGAGCATGTATGGAACCCCTGTCTCAATC 1369 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATC---T 63157 || ||||| ||||| || ||||| | || | | ||||| ||| | ||| | || | Sbjct 1368 TGGGATTCAATAATAGCATTCCA-AAGATGCTGCGCCTTGATT---GTTTTCTTTCCTTT 1313 Query 63158 CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCA 63216 | |||| || ||| |||||| | | |||||| || || |||| | |||| || Sbjct 1312 GCCTTCTTGCTCATATTTAGTATAAAGTGTTTCGAATTCTTCACCCC-AGCATTCAAACA 1254 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 ||| ||||||| | ||||| | | | ||| || || || |||| |||| |||| Sbjct 1253 ATCCTGGACATTGGTTTGGACAAAAGAGGGTCCAGTCACCATCTTCCTCAACTCTCTTCA 1194 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTT 63335 | || | |||| | ||||||||| ||| || | ||||||| ||| | ||| || || Sbjct 1193 TGAACAAATCACAGACCCAAAGAGC-ATAGAACAAGTCTCTTGCTCTGTTTTCTTCTTTA 1135 Query 63336 CCTGTATTCTT-TTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGT 63393 || ||||| ||||| || | || |||| || || | ||||| ||||| | | Sbjct 1134 CCATGGTTCTTCTTTAAACTCAA--AAACTCATAGATGTCTGCGTGCCAAGGTTCGAGAT 1077 Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453 | | ||| | | |||| | || ||||| || || | |||||||| ||||| | Sbjct 1076 AGACGGCAAAAGCTCCTTTTCTCTTACCACCTCCTTGGTCGACATATCTAGCAGTGTTGT 1017 Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 |||| || || | |||||| | | || || || || ||||| || || ||| ||| Sbjct 1016 TATAGACCCTGAGCATTGGGACTACTCCATTAGAGATTCCATTAGTGCCTCTGATGTAGG 957 Query 63514 CTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63573 | || | || | || | || || || || ||||| | |||||||| | Sbjct 956 AGGATGTAGCTCTGATGCAATGGATAGCAAGTCCAATACCACCTGCGTTCTTAGAGATAA 897 Query 63574 ATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 || || |||| | ||||||||||| ||||| || ||| || ||| ||||| Sbjct 896 TGGCACACTGTTTGAGAGTGTCATAGATTCCTTCAATAGAATCCTCTTGCATCGCAAGTA 837 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 ||| || | |||||| | | |||||| | |||||| | || || || || | Sbjct 836 AAAAGCACGAACTCATTTGTGGTTTGGGAGTTCCTGAATTAAACAGAGTGGGGGATGCAT 777 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | || |||||||| | | | | || ||| ||||||| ||| || |||| |||| | Sbjct 776 GAGTGAACCATTTATTACTCATCAAATCGTAAGTCTCAAAAGCAGACTCTAGATCCTTCT 717 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 ||| ||||| | | || | ||| ||||| || ||||| |||| || |||| | Sbjct 716 TATGGATTCCGATAGACACTCTCATCAACATTGTTTGTGGTCTCTCAATGATCTTGTCAT 657 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 | ||| | ||||| ||| | || | |||||| || ||||| Sbjct 656 GAACTTTTAGTAAGTAAGATCTCTCGAGAGTTTTGAATCCAAA 614 >seq17286 Length=2746 Score = 179 bits (198), Expect = 5e-40 Identities = 709/1099 (65%), Gaps = 31/1099 (3%) Strand=Plus/Minus Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 |||||||| ||||| || || ||||| | ||| || || |||||| ||||||| Sbjct 1698 CCTTGAACTCCAATTCCAATGGGTCTGTTTCTGAAGTTTGAATATTCAGCCTCTGGAACT 1639 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTT-TGACCACATC 62893 || ||||| ||| |||| |||| | |||| | | |||| | | | || || || Sbjct 1638 GGGTAATAGTTATTATCAATAACTCTATTCA-AGTTCTTAGTGATGGTCCTGGTTACTTC 1580 Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGA 62950 | || | | | || || || ||| ||| |||||| | ||| | || ||| Sbjct 1579 ATGGAGCCTATCATAGTCGAACACACCTTCTTCATTGACAAACCTTGCCAAGGAAATAGA 1520 Query 62951 TGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 63010 ||| |||||||| || || |||| || ||| | |||| || || ||| ||| || Sbjct 1519 TGCAAGATTACAAACAGCAACCTGATCCTTATCTGTGTATTCCATAATTTCACAGCAGAG 1460 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63070 || | |||||||||||| | |||||| || ||| || | || | || || Sbjct 1459 GTTTGAGCTCTTGATAGTTCCAAGATTTTGCTGGTTAGATTTCCTATTGGCAGAGTCTTT 1400 Query 63071 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63130 ||| || ||| |||| ||| || || ||||| ||||| ||||| || ||||||| | Sbjct 1399 ATAGAGCATGTATGGGACACCGGTCTCGATCTGGGATTCAATAATTGCGTTCCAGAGGTG 1340 Query 63131 TCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCG 63187 | ||||||||| || ||| || | | |||| ||| ||| ||||||||||| Sbjct 1339 TTGAGCCTTTAC---AGTCTTGACTCCTTTACCTTCTTCTTCATATTGAGTATACAATTT 1283 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || ||||||||| | ||||| ||| || |||| |||||| | | | Sbjct 1282 TTCAAATTCTTCTCCCCAACTTTCAAACAATCCAGGGCACTCATTCGGACAGAAGAGGGT 1223 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| | || || || | |||| ||||| || || || | ||| | ||| || || Sbjct 1222 CCAGTTGCCATCCTCTTCAACTCTCTTCATGAACAGGTCTCAGACCCACATAGCGTAGAA 1163 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 || ||||||| ||| | ||| || || || |||||||| || | | |||| || Sbjct 1162 CAAG-TCTCTTGCTCTGTTTTCATCTTTACCATGGTTCTTTTTGAGGTTCAAGAAC-TCA 1105 Query 63367 TA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 || ||||| | |||||| ||||| | || ||||| | | || | || ||| Sbjct 1104 TAGATATCTGCATGCCATGGTTCGAGATAGATGGCGAAGGCGCCTTTTCTCTTACCGCCT 1045 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || || || | ||||| || || | ||| | |||| | ||| || | | || || Sbjct 1044 CCTTGGTCAACATATCTTGCAGTATCATTGAAGACTCGAAGCATGGGCACCAATCCATTA 985 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA---- 63541 || || ||||| || || || | | | || || | | | ||| Sbjct 984 GAACGTCCGTTGGTTCCTCTAATGTA----AGAATTGGTCG-ATCTGATGCAGTGAACAG 930 Query 63542 -TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 || || || || || || | |||||||| | || ||| | || || |||||||||| Sbjct 929 CAAGTCCAATACCTCCGGCATTCTTAGAGATAATAGCACATTGCTTCAATGTGTCATAGA 870 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA---CATTTGGTGAC 63657 | || ||||| |||||| || || | || || ||| ||| |||||| | Sbjct 869 TTCCATCTATAGAATCATCCCGCA--TTGCG-AGCAAGAAGCAAGAACTCATTTGTGGTT 813 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 | |||||| | || || |||||||||| ||| || || |||||||| | | | | Sbjct 812 TTGGAGTTCCTGAGTTGAACAAGGTAGGAGTAGCATGGGTGAACCATTTGTTACTCATCA 753 Query 63718 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63777 | || ||||||| || || || |||||| | || || || | | ||| | || Sbjct 752 AGTCATAAGTCTCAAAGGCAGACTCAATATCCTTCTTGTGGATACCAATAGAGACTCTCA 693 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | | ||| ||| |||||||| ||||| |||| | ||||| | | ||| ||| ||| Sbjct 692 TCAGCATTGTCTGTGGTCTTTCCACAATCTTGTCATCAATTTTTAGGAGGTAAGATCTTT 633 Query 63838 CCAAAGTTTTAAAACCAAA 63856 | | |||||| || || || Sbjct 632 CAAGAGTTTTGAATCCGAA 614 >seq11536 Length=1331 Score = 107 bits (118), Expect = 2e-18 Identities = 436/679 (64%), Gaps = 20/679 (3%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||||| ||| ||||| |||| || | ||||| || ||||| || |||| Sbjct 118 CATGACTCCTGCTTTCTGGTACTCACTGACCTTCCTCTCGAAGAAGTTAGTCTTCCCTTG 177 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | || || | ||||| | || || ||||| | |||||||| | ||| || Sbjct 178 GAGAGAGATCATATCCATCCACTCGAATGGATTACTTACATTGTATAGTTTGGGGGCACC 237 Query 33398 CAATTCAGAAATCAA--TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 || | ||| ||| ||| ||||| ||||| || || ||| |||| | || || Sbjct 238 -AAGTGTGAA-TCAGAGTCTGTCTGCTACGAACTCAATGTATTGGCTCATAAGTTTACTG 295 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || ||||||| ||||| | | | ||| | ||||| ||||| || | || Sbjct 296 TTCATGCCGATGAGTTCGACTGGTAAGGACTCAGATACGAATTCGTGTTCGATCGCAACA 355 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGA-------TGTAATAAATG 33568 || | || || || || | | | || |||| | || | || | || Sbjct 356 GCTTCTGACATGATC--TCGTA--GATCCT---CTCGTTAGACACCTTGTTTACCATGTG 408 Query 33569 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTT 33628 || | | ||| || |||||||| ||| || || || |||||| || |||||||| Sbjct 409 CTTGTAAAGCAAGCAAGCGAAATCAGTGTGAAGTCCTTCATCTCTAGAGATCAATTCGTT 468 Query 33629 AGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33688 ||| || ||||| ||||| | | |||||| |||||||| || | ||||| Sbjct 469 AGAGAAGCAAAGTCCTGGCATCAAAGATCTCTTTTTGAGCCAAAAGATTGCGCAAAATGA 528 Query 33689 TCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33748 |||||| || ||||||||||| || |||||||| || || || || | | | | Sbjct 529 TCCGGAGAAAAAGATTCCTTCGACACAGGCAAAGGCGATGAGCCTTTCAGCGAAGCTATC 588 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 ||| | | ||||| || |||||| || ||||||||||| || | || |||| Sbjct 589 GCTCTTGTTGATCCATTTAATAGCCCATTCAGCCTTCTTTTTGACGGTATCAATATTTTC 648 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || || || ||||| | | ||| || | || ||| ||| ||||| |||| || Sbjct 649 AATAGCTTTGAAGAGGAAATCTTTCTCTTGTTCGTCACTAATATAGGTATCAATCAGGAG 708 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 || | || ||| ||||| || || | || ||||||||||| ||||| | Sbjct 709 GGAGTAGGTCTCACTATGGATGTTCTCCATCATACTTTGGAATCCGTAGAAGCATCTCAC 768 Query 33929 CTC-GGTAATCTGCACTTC 33946 || |||| | || ||||| Sbjct 769 TTCTGGTACT-TGGACTTC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629372106393360