Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq49069 163 7e-35 seq741 136 9e-27 seq11536 127 5e-24 seq10326 127 5e-24 seq12826 100 7e-16 >seq49069 Length=388 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | |||||||| ||||| || ||||| || || Sbjct 1 CCTCCTCTGAGTCTGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTATAATCTGAG 60 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| ||||| || ||||| |||||||| || || || || || || || || || Sbjct 61 AGAGTTCTTCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 120 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| |||||||||||||| | || ||||| || | || ||||| | || || Sbjct 121 ATACCTTCCTTATCCTGAATCTTAGTCTTGACATTGTCAATAGTGTCGCTTTGCTCGACA 180 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 181 TCGAGGGTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATATT 230 >seq741 Length=354 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||||||||||||||| ||||| || | ||||| || || || ||||| |||||||| || Sbjct 2 TTCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCAAGTTGCTTTCCAGCGAA 61 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || || || || || || || || ||||| |||||||||||||| | || || || Sbjct 62 GATAAGTCTTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTGGTCTTGACGTT 121 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || ||||| | || || || || ||||||||||| ||||| || || || || Sbjct 122 GTCAATAGTGTCGCTCTGCTCGACATCAAGAGTAATAGTCTTTCCAGTGAGGGTCTTCAC 181 Query 104548 AAATATCTGCATTTT 104562 || || ||||| || Sbjct 182 GAAGATTTGCATATT 196 >seq11536 Length=1331 Score = 127 bits (140), Expect = 5e-24 Identities = 504/779 (65%), Gaps = 33/779 (4%) Strand=Plus/Minus Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||||| || ||||| | | || |||||||| ||| || | | ||||| ||| Sbjct 851 TTCTTGCCTTCTTTGCTGCTTCAGACGGTATCGTCCTCGAGAACTTGATTGAGAACTTCG 792 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 | || || || | || |||| ||||| || ||||||||||| | || || | Sbjct 791 CTTCTGAAGTCCAAGTACCAGAAGTGAGATGCTTCTACGGATTCCAAAGTATGATGGAGA 732 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAA- 269032 | || ||| |||| ||| || | || ||||| ||||| ||| |||| Sbjct 731 ACATCCATAGTGAGACCTACTCCCTCCTGATTGATACCTATATTAGTGA------CGAAC 678 Query 269033 AAGA-AAAGACTATTTTCTTC-----TATGAGAACTATGGACTGTGTGAGaaaaaaaTCT 269086 |||| ||||| | | ||||| ||| || ||| || || | ||| || || Sbjct 677 AAGAGAAAGATT-TCCTCTTCAAAGCTATTGAAAATATTGATACCGTCAAAAAGAAGGCT 619 Query 269087 GAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTT 269146 ||||||||| | |||||||| ||| | |||| | || |||||| | | || ||| Sbjct 618 GAATGGGCTATTAAATGGATCAACAAGAGCGATAGCTTCGCTGAAAGGCTCATCGCCTTT 559 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 ||| ||| ||||| || || || || || || ||| ||| ||||||||| | || || Sbjct 558 GCCTGTGTCGAAGGAATCTTTTTCTCCGGATCATTTTGCGCAATCTTTTGGCTCAA--AA 501 Query 269207 AGAGGCCTT--ATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG-- 269262 |||| ||| ||||||||| | ||||||||||||||||| || || ||||| Sbjct 500 AGAGATCTTTGATGCCAGGACTTTGCTTCTCTAACGAATTGATCTCTAGAGATGAAGGAC 441 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCA 269322 || ||||| || |||||||| | | ||||| || | | | |||| ||| | Sbjct 440 TTCACACT--GATTTCGCTTGCT--TGCTTTAC-AAGCACATGGTAAACAAGGTGTCTAA 386 Query 269323 AGATAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAAC 269379 || || | ||||| || || ||| ||||||| | | ||| ||||| || | Sbjct 385 CGAGAGGATCTACGAGATCATGTCAGA---AGCTGTTGCGATCGAACACGAATTCGTATC 329 Query 269380 GGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAA 269439 || | || | |||| || ||||| ||||| || ||| |||| |||| ||| | Sbjct 328 TGAGTCCTTACCAGTCGAACTCATCGGCATGAACAGTAAACTTATGAGCCAATACATTGA 269 Query 269440 GTTCGTATCTGATAGATTGCTG-GTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAA 269498 ||||||| | || ||| | ||| | | | || ||| ||| || || | Sbjct 268 GTTCGTAGCAGACAGACT-CTGATTCACACTTGGTGCCCCCAAACTATACAATGTAAGTA 210 Query 269499 ATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGC 269558 |||| || | ||||| | || || | |||| ||| |||| |||||||||| | Sbjct 209 ATCCATTCGAGTGGATGGATATGATCTCTCTCCAAGGGAAGACTAACTTCTTCGAGAGGA 150 Query 269559 GGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCACT 269617 ||| ||| | || |||||| || || ||| | |||||||| || | |||||| Sbjct 149 AGGTCAGTGAGTACCAGAAAGCAGGAGTCATGCAGAAGAAAGAAGACAAGAAGTTCACT 91 >seq10326 Length=2715 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || | || | |||||| || ||||| || || |||||| Sbjct 2314 ATTCCTCCCTTGAGTCTGAGAACCAAGTGAATTGTAGACTCCTTCTGGATGTTGTAGTCA 2373 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| ||||| ||||||||||| || ||||| || || |||| Sbjct 2374 GAGAGGGTTCTTCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGCCTTTGCTGGTCAGCT 2433 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||| | ||||| ||||| | || | | || | ||||| | || Sbjct 2434 GGAATTCCTTCTCTCTCCTGCATCTTGGTCTTGATTGTGTCAATTGTATCAGATTGCTCG 2493 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||| ||||||| | || || ||||| || ||||| Sbjct 2494 ACATCGAGGGTCATTGTCCTACCAGTCAAGGTCTTAACAAAGATTTGCAT 2543 >seq12826 Length=774 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || || || | || || || ||||| || || ||||| || Sbjct 331 CCGCCTCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 272 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || ||||| | ||| |||||||||||||||| || || || || || || Sbjct 271 AGGGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGA 212 Query 104453 ATTCCTTCTTTATCCTGAATCTT 104475 || ||||||||||| || ||||| Sbjct 211 ATACCTTCTTTATCTTGGATCTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150563612052596