Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3822 104 3e-17 >seq3822 Length=3285 Score = 104 bits (114), Expect = 3e-17 Identities = 326/496 (66%), Gaps = 22/496 (4%) Strand=Plus/Plus Query 154602 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 154661 |||||||||||||| |||| ||| ||||||| || ||| | || || |||||| | Sbjct 1917 ATCACAGGGTTTGAAGCTATCTCAATACAACCAAATAGTGGAGCTCAAGGAGAGTATTCT 1976 Query 154662 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 154721 || || ||| | ||| | | |||| ||| ||||| | | |||||| | ||| Sbjct 1977 GGGCTTTTAACTATCAGAAATTTCCATAAAGCTAATGGAGAGGGACACAGAAATATCTGT 2036 Query 154722 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGC--TG-TCATGGCAGGGATG 154778 | || || || || |||||||| || || ||| || || || ||| | ||| Sbjct 2037 CTCATCCCTACCTCGGCTCATGGAACCAACCCAGCTTCAGCAATGCTCTTGG---GTATG 2093 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAG 154838 || |||| | ||| || | ||| | | || || | || | ||||||| Sbjct 2094 AAGATTGTTGCTGTGAAATCTGACAAGAACGGAAATGTTGATGTTGAAGATCTT------ 2147 Query 154839 AAAGCAATCA-TGAAT-ACATTTGAA----CTGTCATGTATTATGATTACATACCCATCT 154892 ||||||| ||| | |||| | | || || |||| ||||| || || ||||| Sbjct 2148 AAAGCAAAGGCTGAGTTACATAAGGATAACCTTTCTTGTACCATGATCACCTATCCATCG 2207 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952 || ||||| || |||||| | ||| | | || ||| ||||| | |||| Sbjct 2208 ACTCATGGAGTTTTTGAAGAAGATATTTTAGAAATCACAGAGACAATTCATAAATATGGA 2267 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 ||| |||| || |||||||||| ||| | ||||| | | |||| || |||| Sbjct 2268 GGTAAGGTCTACATTGATGGAGCTAATATGAATGCTATGATGGGACA--CAGCTCCATCA 2325 Query 155013 GAG-TAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATG 155070 | ||| || | ||||||||||||| | ||| | |||||||| ||| || ||||||| Sbjct 2326 AAACTATTGGAGGAGATGTATGTCATTTGAACCTTCATAAAACTTTCACAATCCCACATG 2385 Query 155071 GAGGTGGAGGTCCTGG 155086 ||||||| ||||| || Sbjct 2386 GAGGTGGTGGTCCAGG 2401 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 153255 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 153314 || ||||| ||||| || | ||||||||| ||||||| || || || || ||||| || Sbjct 532 AATGTTCTAGAGAACCCAAATTGGTACACTCCTTACACACCATACCAGGCAGAGATTGCT 591 Query 153315 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTA 153374 || |||||||||||| || |||||| ||| || | || | || | || || || Sbjct 592 CAAGGAAGATTGGAAAGCTTGCTCAATTTCCAGACTATGATTGCTGATTTGACCGGTTTG 651 Query 153375 CCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || || || || ||||||||||| ||||| | ||| ||||||||| Sbjct 652 GATATTGCCAATGCTTCCCTCTTAGATGAAGCCACTGCTGGAGCTGAAGCAATG 705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 155354 AGTGACAGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACT 155413 ||| || | |||||| || || |||||||| ||||| |||||||||||||| ||||| | Sbjct 2717 AGTTACTGAAGAAGACATTGCCAAGAGACTCATGGATTATGGATTCCATGCTCCTACTGT 2776 Query 155414 ATCGTGGCCTGTGTTAGGAACTATGATGGTAGAACCCACAGAGTCTGAG 155462 ||| | || || ||| ||| |||||||| || |||||||||||| Sbjct 2777 ATCCTTCCCAGTCGCTGGAGGTATCATGGTAGAGCCAACAGAGTCTGAG 2825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| |||| | || ||||||| || ||||| |||||||| | || ||| || | Sbjct 1045 CAAAGACTTGGAGTGCCAATGGGATTCGGTGGTCCACATGCTGCCTATTTCGCAGTAAAA 1104 Query 153828 GACAAGTATAAGAGAAAGA-TACCTGGCAGAATTGTAGGT--CAGTCAGTAGATAGTGAA 153884 || ||| || ||| | | | || || ||| || | ||| ||||||| || | | Sbjct 1105 GAAAAG-ATTAGATTCAAACTTCCAGGAAGAGTTATTGGTGTCAGTCAG--GACGCTCAT 1161 Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 || || | ||| | ||| | ||| | |||||||||||||| ||||| |||||||| | | Sbjct 1162 GGAAACAGAGCCTTGAGAATGGCAATGCAGACTAGAGAGCAACATATTAGGAGAGATAGA 1221 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATG 154002 || || || |||||||| || || || | | || |||||| ||| || |||| Sbjct 1222 GCTACATCAAATATCTGCACTGCACAAGCTTTATTAGCAAATATGGCTGCTTTTTATG 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578803101066080