Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3822 114 2e-20 >seq3822 Length=3285 Score = 114 bits (126), Expect = 2e-20 Identities = 325/493 (66%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 159277 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 159336 |||||||||||||| |||| ||| ||||||| || ||| | || || |||||| | Sbjct 1917 ATCACAGGGTTTGAAGCTATCTCAATACAACCAAATAGTGGAGCTCAAGGAGAGTATTCT 1976 Query 159337 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 159396 || || ||| | ||| | | |||| ||| ||||| | | |||||| | ||| Sbjct 1977 GGGCTTTTAACTATCAGAAATTTCCATAAAGCTAATGGAGAGGGACACAGAAATATCTGT 2036 Query 159397 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAA 159456 | || || || || |||||||| || || || |||||| || | || ||||| Sbjct 2037 CTCATCCCTACCTCGGCTCATGGAACCAACCCAGCTTCAGCAATGCTCTTGGGTATGAAG 2096 Query 159457 GTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAA 159516 |||| | ||| || | ||| | | || || | || | ||||||| ||| Sbjct 2097 ATTGTTGCTGTGAAATCTGACAAGAACGGAAATGTTGATGTTGAAGATCTT------AAA 2150 Query 159517 GCAATCA-TGAAT-ACATTTGAA----CTGTCATGTATTATGATTACATATCCATCTACA 159570 |||| ||| | |||| | | || || |||| ||||| || |||||||| || Sbjct 2151 GCAAAGGCTGAGTTACATAAGGATAACCTTTCTTGTACCATGATCACCTATCCATCGACT 2210 Query 159571 CATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGT 159630 ||||| || |||||| | | || | | || ||| ||||| | |||| ||| Sbjct 2211 CATGGAGTTTTTGAAGAAGATATTTTAGAAATCACAGAGACAATTCATAAATATGGAGGT 2270 Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGA- 159689 |||| || ||||||| || ||| | ||||| | | || | || |||| | Sbjct 2271 AAGGTCTACATTGATGGAGCTAATATGAATGCTATGATGGGACA--CAGCTCCATCAAAA 2328 Query 159690 CTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAG 159748 |||| || | ||||||||||||| | ||| | ||||| || ||| || |||||||||| Sbjct 2329 CTATTGGAGGAGATGTATGTCATTTGAACCTTCATAAAACTTTCACAATCCCACATGGAG 2388 Query 159749 GTGGAGGTCCTGG 159761 |||| ||||| || Sbjct 2389 GTGGTGGTCCAGG 2401 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 157930 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 157989 || ||||| ||||| || | ||||||||| ||||||| || || || || ||||| || Sbjct 532 AATGTTCTAGAGAACCCAAATTGGTACACTCCTTACACACCATACCAGGCAGAGATTGCT 591 Query 157990 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTA 158049 || |||||||||||| || |||||| ||| || | || | || | || || | Sbjct 592 CAAGGAAGATTGGAAAGCTTGCTCAATTTCCAGACTATGATTGCTGATTTGACCGGTTTG 651 Query 158050 CCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || || || || ||||||||||| ||||| | ||| ||||||||| Sbjct 652 GATATTGCCAATGCTTCCCTCTTAGATGAAGCCACTGCTGGAGCTGAAGCAATG 705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 160029 AGTGACAGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACT 160088 ||| || | |||||| || || |||||||| ||||| |||||||||||||| ||||| | Sbjct 2717 AGTTACTGAAGAAGACATTGCCAAGAGACTCATGGATTATGGATTCCATGCTCCTACTGT 2776 Query 160089 ATCGTGGCCTGTGTTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCA 160140 ||| | || || ||| ||| |||||||| ||||||||||||||| || Sbjct 2777 ATCCTTCCCAGTCGCTGGAGGTATCATGGTAGAGCCAACAGAGTCTGAGCCA 2828 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| |||| | || ||||||| ||| ||||| |||||||| | || ||| || | Sbjct 1045 CAAAGACTTGGAGTGCCAATGGGATTCGGTGGTCCACATGCTGCCTATTTCGCAGTAAAA 1104 Query 158503 GACAAGTATAAGAGAAAGA-TACCTGGCAGAATTGTAGGTCAGTCAGT-AGATAGCGAA- 158559 || ||| || ||| | | | || || ||| || | ||| |||||| || || | Sbjct 1105 GAAAAG-ATTAGATTCAAACTTCCAGGAAGAGTTATTGGT--GTCAGTCAGGACGCTCAT 1161 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || || | ||| | ||| | ||| | |||||||||||||| ||||| || ||||| | | Sbjct 1162 GGAAACAGAGCCTTGAGAATGGCAATGCAGACTAGAGAGCAACATATTAGGAGAGATAGA 1221 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATG 158677 || || || |||||||| |||||||| | | || |||||| ||| || |||| Sbjct 1222 GCTACATCAAATATCTGCACTGCACAAGCTTTATTAGCAAATATGGCTGCTTTTTATG 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587635249334320