Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq49392 138 3e-27 seq741 136 9e-27 seq12826 114 3e-20 seq2010 114 3e-20 seq53863 104 5e-17 seq6717 84.2 5e-11 >seq49392 Length=484 Score = 138 bits (152), Expect = 3e-27 Identities = 130/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||||||||| || | || || || |||||||| || || || |||| |||| | Sbjct 322 TCTGAGTCTCAAGACCAAATGGAGGGTACTTTCTTTTTGGATGTTATAGTCGGACAAG-G 380 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| ||||| || || ||||| || |||||||| |||| ||| |||||||| ||||| | Sbjct 381 TTCTGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATAC 440 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||||||||||||| || ||| ||||| ||||||||||| Sbjct 441 CTTCTTTGTCTTGAATCTTAGTCTTTACGTTGTCAATGGTGTC 483 >seq741 Length=354 Score = 136 bits (150), Expect = 9e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| ||||||||||| || | | ||||| ||||| || || ||||| || |||||| Sbjct 3 TCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCAAGTTGCTTTCCAGCGAAG 62 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||||| ||| |||||||| || || ||||| || || ||||| || ||||||||| Sbjct 63 ATAAGTCTTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTGGTCTTGACGTTG 122 Query 195070 TCAATGGTGTCCGAACT-TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 ||||| |||| || || || || ||||| |||| |||||||| || | || || || Sbjct 123 TCAATAGTGT-CGCTCTGCTCGACATCAAGAGTAATAGTCTTTCCAGTGAGGGTCTTCAC 181 Query 195129 GAACACTTGCAT 195140 ||| | |||||| Sbjct 182 GAAGATTTGCAT 193 >seq12826 Length=774 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || ||||| ||||||||||| || || || ||||| |||| || || Sbjct 326 TCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 267 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || || || | || ||| |||||||| ||||| || Sbjct 266 TCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGAATACC 207 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || Sbjct 206 TTCTTTATCTTGGATCTT 189 >seq2010 Length=934 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || ||||| ||||||||||| || || || |||||||||| || || Sbjct 362 TCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 303 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| ||||| || || | || ||| ||||| || || || || Sbjct 302 TCTTCCATCTTCCAATTGCTTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGGGATACC 243 Query 195039 TTCTTTGTCTTGAATTTT 195056 ||| || ||||| ||||| Sbjct 242 TTCCTTATCTTGGATTTT 225 >seq53863 Length=275 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | ||| || || || || ||||| || ||||| || | ||||| Sbjct 114 TCTCAATCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGAGT 173 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||| || |||||||| | || ||| || ||||||||||| || Sbjct 174 TCTTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATACC 233 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| || ||||| || || ||| ||||| ||||| || || Sbjct 234 TTCCTTATCTTGGATCTTGGTCTTTACGTTGTCAATAGTATC 275 >seq6717 Length=3594 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| || || ||||| | | | | || | || || |||| || Sbjct 2748 TCTGAGTCTGAGAACGAGATGTAGAGTTTGCCCATCGTATATTTCATATTCACCAAGTGT 2689 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||||| || ||| |||| || ||||||||| ||| || ||||||||||| || Sbjct 2688 TCTTTCATCTTCTAGTTGCATACCAGCATAGATAAGTCTTTGCTGATCTGGAGGAATTCC 2629 Query 195039 TTCTTTGTCTTGAATT 195054 |||| |||||| ||| Sbjct 2628 TTCTACGTCTTGGATT 2613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108677202610229