Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq29984 250 3e-61 seq17286 194 2e-44 seq11536 82.4 9e-11 >seq29984 Length=2719 Score = 250 bits (276), Expect = 3e-61 Identities = 610/916 (67%), Gaps = 10/916 (1%) Strand=Plus/Minus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 |||||||| || || || |||||||| | || | || |||||||| || | ||| Sbjct 1524 ATAGATGCCAGGTTGCAGACAGCTACTTGATCTTTATCAGTATATTCCATAACCTCACAG 1465 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || ||||| | ||||||||| || | ||| || |||||| ||||| | | Sbjct 1464 CAAAGATTCGAGCTTTTGATAGTTCCAAGATTCTGTTGATTAGATTTCTTGTTGGCAGAG 1405 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 ||||| || ||||| | || || || || ||||| |||||||| |||| |||||| Sbjct 1404 TCCTTATAGAGCATGTATGGAACCCCTGTCTCAATCTGGGATTCAATAATAGCATTCCAA 1345 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAAC 48122 | | | ||||| || | |||| || || || ||||||||||| | Sbjct 1344 AGATGCTGCGCCTTGATTGTTTTCTTTCCTTTGCCTTCTTGCTCATATTTAGTATAAAGT 1285 Query 48123 TTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACATCAA 48181 | || ||||| || || | |||| | || || ||||||| || ||||| | | Sbjct 1284 GTTTCGAATTCTTCACCCCAG-CATTCAAACAATCCTGGACATTGGTTTGGACAAAAGAG 1226 Query 48182 TGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTAT 48241 | ||| || |||| | | ||||| |||| || | ||| | ||||||||| || Sbjct 1225 GGTCCAGTCACCATCTTCCTCAACTCTCTTCATGAACAAATCACAGACCCAAAGAGC-AT 1167 Query 48242 A-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAG 48299 | || || || || | ||| |||||| || ||| ||| | ||||| |||| ||| Sbjct 1166 AGAACAAGTCTCTTGCTCTGTTTTCTTCTTTACCATGGTTCTTCTTTAAACTCAA-AAAC 1108 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || || || || ||||| ||||| | ||| | || | | ||| || ||| | Sbjct 1107 TCATAGATGTCTGCGTGCCAAGGTTCGAGATAGACGGCAAAAGCTCCTTTTCTCTTACCA 1048 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | |||||| ||||| |||||||| || || | ||||||||| | ||| Sbjct 1047 CCTCCTTGGTCGACATATCTAGCAGTGTTGTTATAGACCCTGAGCATTGGGACTACTCCA 988 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || || ||||| || || || || ||||||| || | || | | Sbjct 987 TTAGAGATTCCATTAGTGCCTCTGATGTAGGAGGATGTAGCTCTGATGCAATGGATAGCA 928 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||||||||| | ||||| || | |||||| |||| || || ||||| ||| Sbjct 927 AGTCCAATACCACCTGCGTTCTTAGAGATAATGGCACACTGTTTGAGAGTGTCATAGATT 868 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 ||||| ||| ||| ||| ||| | || ||| || | |||||| || | | Sbjct 867 CCTTCAATAGAATCCTCTTGCATCGCAAGTAAAAAGCACGAACTCATTTGTGGTTTGGGA 808 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAACAATT 48657 |||||||||||||| | || || ||||||||| | |||||||| | || || ||| | Sbjct 807 GTTCCTGAATTAAACAGAGTGGGGGATGCATGAGTGAACCATTTATTACTCAT--CAAAT 750 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 || || |||| | |||| |||| |||| | ||| || || ||||| || | ||| | Sbjct 749 CGTAAGTCTCAAAAGCAGACTCTAGATCCTTCTTATGGATTCCGATAGACACTCTCATCA 690 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||| ||| ||||| |||| || |||| || | ||| | | || ||| | || | Sbjct 689 ACATTGTTTGTGGTCTCTCAATGATCTTGTCATGAACTTTTAGTAAGTAAGATCTCTCGA 630 Query 48778 ATGTTTTAAAACCAAA 48793 ||||| || ||||| Sbjct 629 GAGTTTTGAATCCAAA 614 >seq17286 Length=2746 Score = 194 bits (214), Expect = 2e-44 Identities = 604/923 (65%), Gaps = 24/923 (3%) Strand=Plus/Minus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 |||||||| |||||||| ||||| |||| || || || |||| || |||||| Sbjct 1524 ATAGATGCAAGATTACAAACAGCAACCTGATCCTTATCTGTGTATTCCATAATTTCACAG 1465 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTACAT 47999 || || || | |||||||| || | |||||| || ||| || ||| | | Sbjct 1464 CAGAGGTTTGAGCTCTTGATAGTTCCAAGATTTTGCTGGTTAGATTTCCTATTGGCAGA- 1406 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 ||| || || ||||| | || || || || ||||| |||||||| || | ||| Sbjct 1405 --GTCTTTATAGAGCATGTATGGGACACCGGTCTCGATCTGGGATTCAATAATTGCGTTC 1348 Query 48060 CAAACAGTCCT-AGCCTTTATAACAGCTCTAG----CTTTATTATCATGTTCGTATTTAG 48114 || | || | |||||||| ||| ||| | ||||| || | ||| |||| || Sbjct 1347 CAGAG-GTGTTGAGCCTTTA---CAG-TCTTGACTCCTTTACCTTCTTCTTCATATTGAG 1293 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGA 48173 |||| || || |||||||| || || | || || | || ||||| || ||||| ||| Sbjct 1292 TATACAATTTTTCAAATTCTTCTCCCCA-ACTTTCAAACAATCCAGGGCACTCATTCGGA 1234 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 || | | | ||| | |||| | || ||||| |||| || | ||| | ||| Sbjct 1233 CAGAAGAGGGTCCAGTTGCCATCCTCTTCAACTCTCTTCATGAACAGGTCTCAGACCCAC 1174 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG-TTC 48292 | ||| || || || || | ||| ||| || || ||| ||| |||| || ||| Sbjct 1173 ATAGCGTAGAACAAGTCTCTTGCTCTGTTTTCATCTTTACCATGGTTCTTTTTGAGGTTC 1114 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 ||||| || ||||| |||||||||||||| | ||| || || | | ||| || Sbjct 1113 AAGAAC-TCATAGATATCTGCATGCCATGGTTCGAGATAGATGGCGAAGGCGCCTTTTCT 1055 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 ||| |||||||| || | |||||| ||||||| || | |||| | ||| || || Sbjct 1054 CTTACCGCCTCCTTGGTCAACATATCTTGCAGTATCATTGAAGACTCGAAGCATGGGCAC 995 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||||| || || |||||||| ||| ||| | | ||| || Sbjct 994 CAATCCATTAGAACGTCCGTTGGTTCCTCTAATGTAAGAATTGGTCGATCTGATGCAGTG 935 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || | || || ||||| || || | ||||| || | |||||| | || | || || Sbjct 934 AACAGCAAGTCCAATACCTCCGGCATTCTTAGAGATAATAGCACATTGCTTCAATGTGTC 875 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||| ||||| |||||| |||||| ||| | | || ||| | |||||| || Sbjct 874 ATAGATTCCATCTATAGAATCATCCCGCATTGCGAGCAAGAAGCAAGAACTCATTTGTGG 815 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGAT 48650 | ||||||||| || || || || |||| ||||| | |||||||| | || || Sbjct 814 TTTTGGAGTTCCTGAGTTGAACAAGGTAGGAGTAGCATGGGTGAACCATTTGTTACTCAT 755 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 ||| | ||| || |||| |||| || |||||| | || ||||| ||||| || Sbjct 754 --CAAGTCATAAGTCTCAAAGGCAGACTCAATATCCTTCTTGTGGATACCAATAGAGACT 697 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 | ||| | ||| || |||||||| ||||| |||| || ||||| | || || ||| Sbjct 696 CTCATCAGCATTGTCTGTGGTCTTTCCACAATCTTGTCATCAATTTTTAGGAGGTAAGAT 637 Query 48771 TTTTCCAATGTTTTAAAACCAAA 48793 |||| | ||||| || || || Sbjct 636 CTTTCAAGAGTTTTGAATCCGAA 614 >seq11536 Length=1331 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/219 (68%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||| || || |||||| || ||||| || |||||| |||||||| ||||| || Sbjct 418 CAAGCAAGCGAAATCAGTGTGAAGTCCTTCATCTCTAGAGATCAATTCGTTAGAGAAGCA 477 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | || ||||||| ||| ||||| | ||| || || | ||||||||| || || Sbjct 478 AAGTCCTGGCATCAAAGATCTCTTTTTGAGCCAAAAGATTGCGCAAAATGATCCGGAGAA 537 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || || ||||| || ||||| || | || ||||| | | ||| || | || Sbjct 538 AAAGATTCCTTCGACACAGGCAAAGGCGATGAGCCTTTCAGCGAAGCTA---TCGCTCTT 594 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC 19175 | |||||||| | ||||| |||||||||||||| || Sbjct 595 GTTGATCCATTTAATAGCCCATTCAGCCTTCTTTTTGAC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561711199366680