Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq53863 98.7 8e-16 seq2010 89.7 4e-13 seq12826 84.2 2e-11 >seq53863 Length=275 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||| || | | || || || ||||| ||||| ||||| || ||||| || | Sbjct 108 TCCACCTCTCAATCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 167 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 || |||||| | || ||||||||||| || || || ||||| | || ||||| || || Sbjct 168 GAGAGTTCTTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGG 227 Query 101362 AATGCCTTCTTTATCTTGAATTTT 101385 ||| ||||| |||||||| || || Sbjct 228 AATACCTTCCTTATCTTGGATCTT 251 >seq2010 Length=934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || |||||||||| || ||||| |||| ||||||||| Sbjct 343 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTTCTTCCATCTTCCAATTGC 284 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||||| || || | || || || || || || ||||| |||||||| ||||| Sbjct 283 TTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGGGATACCTTCCTTATCTTGGATTTT 225 >seq12826 Length=774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| |||| || ||||| |||| ||||||||| Sbjct 307 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCAATTGC 248 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || || | || || || || ||||| |||||||||||||| || || Sbjct 247 TTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGGATCTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396005104991559