Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq49069 100 5e-16 seq2010 95.1 2e-14 seq12826 86.0 1e-11 >seq49069 Length=388 Score = 100 bits (110), Expect = 5e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||| | || || | |||| || | ||| || ||||| || || | ||| Sbjct 46 ATGTTATAATCTGAGAGAGTTCTTCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTT 105 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| ||||| || || ||| | || ||||| ||||| Sbjct 106 TGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGTCTTGACATTGTCAATAGTG 165 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || |||||||| |||||||| | || || | ||| || ||| Sbjct 166 TCGCTTTGCTCGACATCGAGGGTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGC 225 Query 172068 AT-TTTATTATAAAA 172081 || ||| ||| |||| Sbjct 226 ATATTTCTTAAAAAA 240 >seq2010 Length=934 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| |||| | || | || | ||| | ||| || || || ||||| || Sbjct 368 ACCACCTCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 309 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | | || |||||||| || || |||||||||||||| || ||||||||||| Sbjct 308 GAGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGG 249 Query 171962 TATTCCTTCTTTATCTTGTATTTTA 171986 || ||||| |||||||| |||||| Sbjct 248 GATACCTTCCTTATCTTGGATTTTA 224 >seq12826 Length=774 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| |||| | || | || | ||| | ||| || || || || || || Sbjct 332 ACCGCCTCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 273 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | | || |||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 272 GAGGGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGG 213 Query 171962 TATTCCTTCTTTATCTTGTATTTTA 171986 || |||||||||||||| || ||| Sbjct 212 AATACCTTCTTTATCTTGGATCTTA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904495763364600