Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq49069 98.7 9e-16 seq53863 91.5 1e-13 seq49392 86.0 6e-12 >seq49069 Length=388 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| ||||| || || | | Sbjct 227 ATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATTACCCTCGATGTCGAGCAAAGC 168 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || ||||| || || || || || Sbjct 167 GACACTATTGACAATGTCAAGACTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAG 108 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || ||||| |||| | |||||||||||| Sbjct 107 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGACGGAAGAACTCTCTCAGATTATAAC 48 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || |||||||| Sbjct 47 ATCCAGAAGGAATCTACCCTTCACTTGGT 19 >seq53863 Length=275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || ||||| || ||||| ||||| ||| | |||||||| || || || Sbjct 251 AAGATCCAAGATAAGGAAGGTATTCCTCCAGATCAGCAAAGATTGATCTTCGCTGGAAAG 192 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| || |||| | || || || ||||| ||||||||||| || || ||| Sbjct 191 CAATTGGAAGACGGAAGAACTCTCTCTGACTACAACATCCAAAAGGAATCAACCCTCCAC 132 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | ||||| | || || Sbjct 131 TTGGTCCTCAGATTGAGAGGTGG 109 >seq49392 Length=484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||||||||| || || || || || ||| | | ||||| || || || Sbjct 459 AAGATTCAAGACAAAGAAGGTATTCCACCAGACCAGCAAAGACTCATCTTCGCTGGAAAG 400 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| |||| | |||| || |||||||| ||||| ||| || || || Sbjct 399 CAACTTGAGGATGGCAGAACCTTGTCCGACTATAACATCCAAAAAGAAAGTACCCTCCAT 340 Query 24908 TTGGTGTTGCGA 24919 ||||| ||| || Sbjct 339 TTGGTCTTGAGA 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449579370556360