Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq17286 181 3e-40 seq29984 145 2e-29 seq11536 120 7e-22 seq28421 84.2 5e-11 >seq17286 Length=2746 Score = 181 bits (200), Expect = 3e-40 Identities = 369/545 (68%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||||||||||||| | || ||| |||||||| | |||| || ||||||||| Sbjct 776 CATGCTACTCCTACCTTGTTCAACTCAGGAACTCCAAAACCACAAATGAGTTCTTGCTTC 835 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 | || | ||| ||||||||||| || || || ||||| | | || || |||| Sbjct 836 TTGCTCGCAATGCGGGATGATTCTATAGATGGAATCTATGACACATTGAAGCAATGTGCT 895 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA 110648 |||| ||||| || | ||||| ||||| || ||||| || | || || Sbjct 896 ATTATCTCTAAGAATGCCGGAGGTATTGGACTTGCTGTTCACTGCATCAGATC-----GA 950 Query 110649 GCAAATATCGCAACAGCG-----AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAG 110703 ||| | | || || | || || ||| | |||| | || || ||| | ||| Sbjct 951 CCAATTCTTACATTAGAGGAACCAACGGACGTTCTAATGGATTGGTGCCCATGCTTCGAG 1010 Query 110704 TCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTG 110760 ||||||| || ||||||| |||||| | ||||| || ||||||||| ||| | || | Sbjct 1011 TCTTCAATGATACTGCAAGATATGTTGACCAAGGAGGCGGTAAGAGAAAAGGCGCCTTCG 1070 Query 110761 CTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA-AAT 110819 | |||||||||||||| |||||| ||||||| | ||| ||||| |||| || ||| || Sbjct 1071 CCATCTATCTCGAACCATGGCATGCAGATATCTATGAGTTCTT-GAACCTCAAAAAGAAC 1129 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || || ||| | |||||| | || || || || || |||||| | | ||| | Sbjct 1130 CATGGTAAAGATGAAAACAGAGCAAGAGACTTGTTCTACGCTATGTGGGTCTGAGACCTG 1189 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939 |||||||| | ||| |||| |||||| ||| | || | ||||| || | ||| Sbjct 1190 TTCATGAAGAGAGTTGAAGAGGATGGCAACTGGACCCTCTTCTGTCCGAATGAGTGCCCT 1249 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA 110999 || | | ||| | ||| |||| |||||| | | || |||||||| ||||| Sbjct 1250 GGATTGTTTGAAAGTTGGGGAGAAGAATTTGAAAAATTGTATACTCAATATGAAGAAGAA 1309 Query 111000 GGCAA 111004 || || Sbjct 1310 GGTAA 1314 >seq29984 Length=2719 Score = 145 bits (160), Expect = 2e-29 Identities = 542/840 (65%), Gaps = 11/840 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||| ||||||||||| || | |||| ||||| || ||| | |||||||||| Sbjct 614 TTTGGATTCAAAACTCTCGAGAGATCTTACTTACTAAAAGTTCATGACAAGATCATTGAG 673 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 | || ||| ||||| | | || | || || || ||| | ||| | | || Sbjct 674 AGACCACAAACAATGTTGATGAGAGTGTCTATCGGAATCCATAAGAAGGATCTAGAGTCT 733 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTACCCT 110485 | | |||| ||| ||| | | ||||| || | | | | |||||| | || || || Sbjct 734 GCTTTTGAGACTTACGATTTGATGAGTAATAA-ATGGTTCACTCATGCATCCCCCACTCT 792 Query 110486 ATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGA 110545 ||||| |||||||| | |||| || ||| |||||| | || | || | || Sbjct 793 GTTTAATTCAGGAACTCCCAAACCACAAATGAGTTCGTGCTTTTTACTTGCGATGCAAGA 852 Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 |||||||||||||| || ||||| |||| ||| | ||| |||| ||||| ||| | Sbjct 853 GGATTCTATTGAAGGAATCTATGACACTCTCAAACAGTGTGCCATTATCTCTAAGAACGC 912 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 || || ||||| || | ||| || | | | | | | ||| | | Sbjct 913 AGGTGGTATTGGACTTGCTATCCATTGCATCAGAGCTACATCCTCCTACATCAGAGGCAC 972 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || || || | |||| | || |||||| | || |||| ||| ||||||| | ||| Sbjct 973 TAATGGAATCTCTAATGGAGTAGTCCCAATGCTCAGGGTCTATAACAACACTGCTAGATA 1032 Query 110726 TGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| | ||||| |||||||||||| || | ||||| ||||||||||||||||||| Sbjct 1033 TGTCGACCAAGGAGGTGGTAAGAGAAAAGGAGCTTTTGCCGTCTATCTCGAACCTTGGCA 1092 Query 110783 TTCAGATATATTTGAATTCTTAGAACTT-CGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 |||| || | ||| || || || || || || || || |||||| | |||| Sbjct 1093 CGCAGACATCTATGAGTT-TTTGAGTTTAAAGAAGAACCATGGTAAAGAAGAAAACAGAG 1151 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 || | || || || ||||| | ||| | | ||||| |||||||| | ||| | ||| Sbjct 1152 CAAGAGACTTGTTCTATGCTCTTTGGGTCTGTGATTTGTTCATGAAGAGAGTTGAGGAAG 1211 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 |||| ||| | || | ||||| | | | ||| || | | ||| | || Sbjct 1212 ATGGTGACTGGACCCTCTTTTGTCCAAACCAATGTCCAGGATTGTTTGAATGCTGGGGTG 1271 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGC-AAGTTTCGCAAACAAATT 111020 |||| || ||| ||||| |||||||| |||||||| ||| | |||||| | Sbjct 1272 AAGAATTCGAAACACTTTATACTAAATATGAGCAAGAAGGCAAAGGAAAGAAAACAA--T 1329 Query 111021 CCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | | || || | |||||| || ||||||| || |||| || || ||| || Sbjct 1330 CAAGGCGCAGCATCTTTGGAATGCTATTATTGAATCCCAGATTGAGACAGGGGTTCCATA 1389 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | ||||| || | || |||||||||||| |||| | ||||| || || Sbjct 1390 CATGCTCTATAAGGACTCTGCCAACAAGAAATCTAATCAACAGAATCTTGGAACTATCAA 1449 >seq11536 Length=1331 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACA 131857 |||||||| || |||||||||||||||||||| ||| | || || || || || | Sbjct 630 AAAAAGAAGGCTGAATGGGCTATTAAATGGAT-CAACAAGAG--CGATAGCTTCGCTGAA 574 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 || || | || ||||| ||||| ||||| || || || || || | || || || ||| Sbjct 573 AGGCTCATCGCCTTTGCCTGTGTCGAAGGAATCTTTTTCTCCGGATCATTTTGCGCAATC 514 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||||| || ||| | |||||||| ||||| | || || || |||| ||||| Sbjct 513 TTTTGGCTCAAAAAGAGATCTTTGATGCCAGGACTTTGCTTCTCTAACGAATTGATCTCT 454 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCT 132007 |||||||||| | | || ||||| || ||| Sbjct 453 AGAGATGAAGGACTTCACACTGATTTCGCT 424 >seq28421 Length=1904 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||||||| |||||| | ||| |||| |||||||| ||||| || ||||| Sbjct 290 GATATTGTTGAGAGACATCTTTCAGACGGTGATACAGTTCTGTTTAATAGACAGCCATCT 231 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGA 305413 || || | | || || ||| || || ||||||||| | || | ||| | || Sbjct 230 CTTCACAGGCTCTCCATCATGAGCCACAAGGTCAAAGTAATGCCTTGGAAAACACTCAGA 171 Query 305414 TTAAATGTAAG-TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 || || | | | |||| || ||||||||||| ||||| ||||| ||||||||||| || Sbjct 170 TTTAACGAATGCTGCT-GTGGACCTTATAATGCAGATTTCGATGGTGATGAAATGAACAT 112 Query 305473 GCATGTACCTCAA 305485 ||| | |||||| Sbjct 111 ACATCTTCCTCAA 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185952335871107