Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq49069 96.9 3e-15 seq53863 82.4 7e-11 >seq49069 Length=388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 |||| || |||||| | || ||||| || | || || || | || || |||| ||| Sbjct 236 TTAAGAAATATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATTACCCTCGATGTC 177 Query 25226 GAAGCCAA-CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 || || || ||| ||||| || | || || || ||| ||||| || ||||| || Sbjct 176 GA-GCAAAGCGACACTATTGACAATGTCAAGACTAAGATTCAGGATAAGGAAGGTATCCC 118 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAG 25344 || || |||||||||||||| | || || || ||||| || || | |||| | || Sbjct 117 ACCAGACCAGCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGACGGAAGAACTCTCTC 58 Query 25345 CGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 57 AGATTATAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTCAGACTCAGAGGAGG 1 >seq53863 Length=275 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | ||||| || || ||||| || ||||| || || |||||| Sbjct 275 GATACTATTGACAACGTAAAGACCAAGATCCAAGATAAGGAAGGTATTCCTCCAGATCAG 216 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || || ||| | ||||| | |||| | || || ||||| Sbjct 215 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAAGACGGAAGAACTCTCTCTGACTACAAC 156 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || ||||| ||||| ||| | || || || | ||||||||||| ||| Sbjct 155 ATCCAAAAGGAATCAACCCTCCACTTGGTCCTCAGATTGAGAGGTGGA 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444779568039840