Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq49069 141 1e-28 seq741 125 8e-24 seq49392 102 9e-17 seq12826 100 3e-16 seq10326 96.9 4e-15 seq17286 82.4 9e-11 >seq49069 Length=388 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| || ||||| ||||| || || || ||| | | Sbjct 227 ATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATTACCCTCGATGTCGAGCAAAGC 168 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| |||| |||||||| ||||| || || || ||||||||| Sbjct 167 GACACTATTGACAATGTCAAGACTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAG 108 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || ||||| |||||||| ||||| | | || || |||| ||||| Sbjct 107 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGACGGAAGAACTCTCTCAGATTATAAC 48 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||| || ||||| Sbjct 47 ATCCAGAAGGAATCTACCCTTCA 25 >seq741 Length=354 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG-G 27464 ||||||||||| || ||||| || || || ||||||||||||||||| || ||| ||| | Sbjct 193 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACTATTACTCTTGATGTCGAG-CAGAG 135 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || |||||||| ||||| || || || |||||||| Sbjct 134 CGACACTATTGACAACGTCAAGACCAAGATTCAGGATAAGGAAGGTATCCCACCAGACCA 75 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || || ||||| |||||||| ||||||| | || | ||||||| || Sbjct 74 GCAAAGACTTATCTTCGCTGGAAAGCAACTTGAGGATGGAAGAACATTGTCAGACTACAA 15 Query 27585 TGTCCAAAAGGAA 27597 | | || || ||| Sbjct 14 TATTCAGAAAGAA 2 >seq49392 Length=484 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||| |||| ||||| ||||| || || ||||| |||||||| Sbjct 484 TGACACCATTGACAACGTAAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCAGACCA 425 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || || ||||| |||||||| ||||||| | ||| | | |||||||| Sbjct 424 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGCAGAACCTTGTCCGACTATAA 365 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| ||| || || ||| | |||||| | || | |||||| Sbjct 364 CATCCAAAAAGAAAGTACCCTCCATTTGGTCTTGAGACTCAGAGGTGGA 316 >seq12826 Length=774 Score = 100 bits (110), Expect = 3e-16 Identities = 167/243 (69%), Gaps = 30/243 (12%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG--- 27459 |||||||| || || |||||||| ||||| |||||||| ||||||||||| || ||| Sbjct 72 ATAATGCAGATTTTCGTCAAGACTCTTACAGGCAAGACGATTACTCTTGACGTCGAGCAG 131 Query 27460 -------------------TCAGGTGATAGCAT----TGCAA-ATTTGA--AGG-CTAAA 27492 ||| || | || | | ||| ||||| ||| |||| Sbjct 132 AGCGATACTATCGACAATGTCAAGTAAGTGCTTACCTTACAATATTTGTGTAGGACTAAG 191 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || || || || || ||||| ||||||||||| | ||||||||||||| |||||| Sbjct 192 ATCCAAGATAAAGAAGGTATTCCACCAGACCAGCAAAGATTAATTTTTGCTGGAAAGCAA 251 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || |||| | ||||| | ||||| || |||| ||||| |||||||| || || Sbjct 252 TTGGAAGATGGAAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTC 311 Query 27613 GTC 27615 ||| Sbjct 312 GTC 314 >seq10326 Length=2715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || | ||| || || || || || ||| | | Sbjct 2543 ATGCAAATCTTTGTTAAGACCTTGACTGGTAGGACAATGACCCTCGATGTCGAGCAATCT 2484 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | | ||| | || || ||||| | || |||||||| | |||||| Sbjct 2483 GATACAATTGACACAATCAAGACCAAGATGCAGGAGAGAGAAGGAATTCCAGCTGACCAG 2424 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||||| || || | | ||||| | ||||| || Sbjct 2423 CAAAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGAAGAACCCTCTCTGACTACAAC 2364 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| || || |||| Sbjct 2363 ATCCAGAAGGAGTCTACAATTCA 2341 >seq17286 Length=2746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 80044 AGATAGTACATGCCC-GTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG 80102 |||||||| ||||| |||||||| || |||||||| | || | ||||| ||||| | Sbjct 2397 AGATAGTAT-TGCCCAGTCTTGAGACCATTCTTCCAAGCATAGAAATGCATCGAACTCAT 2339 Query 80103 CTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGC 80162 ||| |||| ||| || | ||||| ||| |||| ||| || |||||||||||| | | Sbjct 2338 CTTAGCAAATGTTGGTTCACCCATGTAGACATTCAAAGATTGTGACTGACAGATGTATGG 2279 Query 80163 CCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | | || |||| | || || | |||||| || || ||||| ||||| Sbjct 2278 AGCTCTGTCAATAGCCAAGTTAAGAAGAGTCTTTTGAGGGATCTCCCAAACTGT 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569906998067440