Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq49069 134 3e-26 seq2010 120 7e-22 seq741 113 1e-19 seq12826 111 4e-19 seq49392 104 5e-17 seq53863 102 2e-16 >seq49069 Length=388 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | |||||| || || || || |||||||||||||| | || || ||| Sbjct 10 AGTCTGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTATAATCTGAGAGAGTTCTT 69 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| || |||||||| || | ||| ||||| || || | |||||| Sbjct 70 CCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCC 129 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGA 211073 || ||||| ||||| || || || || || ||||| |||| || || ||||| Sbjct 130 TTATCCTGAATCTTAGTCTTGACATTGTCAATAGTGTC---GCTTTGCTCGACATCGAGG 186 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || || |||||||| || | ||||| || Sbjct 187 GTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATATT 230 >seq2010 Length=934 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| ||||| ||||||||||| || |||||||| ||||| | ||||| ||| Sbjct 358 AGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTTCTT 299 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| ||||| || || | | ||| |||||||| || | |||||| Sbjct 298 CCATCTTCCAATTGCTTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGGGATACCTTCC 239 Query 211017 TTGTCCTGGATCTT 211030 || || ||||| || Sbjct 238 TTATCTTGGATTTT 225 >seq741 Length=354 Score = 113 bits (124), Expect = 1e-19 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||| || || || || || | | || |||||||| || || ||||| || |||||| Sbjct 3 TCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCAAGTTGCTTTCCAGCGAAG 62 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 ||||| | ||| ||||| || || | |||||||| ||||| ||||| || ||||| Sbjct 63 ATAAGTCTTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTGGTCTTGACGTTG 122 Query 211044 TCGATGGTGTCAGAGCT-TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| | || || || || ||||| || |||||||| ||||| ||||| || Sbjct 123 TCAATAGTGTC-GCTCTGCTCGACATCAAGAGTAATAGTCTTTCCAGTGAGGGTCTTCAC 181 Query 211103 AAACACCTGCAT-TTTAT 211119 || | ||||| ||||| Sbjct 182 GAAGATTTGCATATTTAT 199 >seq12826 Length=774 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| ||||| ||||||||||| || |||||||| || || | ||||| ||| Sbjct 322 AGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTT 263 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| || || || || | | ||| ||||| || |||| ||||| Sbjct 262 CCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGAATACCTTCT 203 Query 211017 TTGTCCTGGATCTT 211030 || || |||||||| Sbjct 202 TTATCTTGGATCTT 189 >seq49392 Length=484 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||||||||||||||| || | | ||| || ||||| || || ||||| || |||||| Sbjct 353 TCTTTTTGGATGTTATAGTCGGACAAGGTTCTGCCATCCTCAAGTTGCTTTCCAGCGAAG 412 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || | ||| ||||| || |||| ||||| ||||| || ||||| || ||||| Sbjct 413 ATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTAGTCTTTACGTTG 472 Query 211044 TCGATGGTGTCA 211055 || ||||||||| Sbjct 473 TCAATGGTGTCA 484 >seq53863 Length=275 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| || || || || ||||||||||| || || | || || ||||| Sbjct 120 TCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCC 179 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || |||||||| | | ||| || || ||||||| |||||||| Sbjct 180 GTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATACCTTCCTT 239 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 || |||||||| || ||||| || || || || Sbjct 240 ATCTTGGATCTTGGTCTTTACGTTGTCAATAGTATC 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158311590530255