Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq49392 127 5e-24 seq12826 120 7e-22 seq53863 116 9e-21 seq49069 116 9e-21 seq2010 116 9e-21 seq741 105 2e-17 seq47411 98.7 2e-15 >seq49392 Length=484 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | ||||| || ||||||||||| || || |||| ||| ||||| Sbjct 326 AGTCTCAAGACCAAATGGAGGGTACTTTCTTTTTGGATGTTATAGTCGGACAAGGTTCTG 385 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || ||||| ||||||||||| |||| ||| ||||| || ||||||||||| Sbjct 386 CCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATACCTTCT 445 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||||| ||| || || |||||||| Sbjct 446 TTGTCTTGAATCTTAGTCTTTACGTTGTCAATGGTGTC 483 >seq12826 Length=774 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| |||||||||||||| || || |||| ||||| |||| | ||||| Sbjct 322 AGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTT 263 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | ||||| ||||| || || | || ||| ||||| || ||||||||||| Sbjct 262 CCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGAATACCTTCT 203 Query 225616 TTGTCTTGGATCTT 225629 || ||||||||||| Sbjct 202 TTATCTTGGATCTT 189 >seq53863 Length=275 Score = 116 bits (128), Expect = 9e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | |||||| || ||||| ||||||| ||||| || | | |||||| || Sbjct 120 TCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCC 179 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||||||||| | || ||| || || || |||||||||||||| Sbjct 180 GTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATACCTTCCTT 239 Query 225618 GTCTTGGATCTT 225629 ||||||||||| Sbjct 240 ATCTTGGATCTT 251 >seq49069 Length=388 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | ||| || || ||||| || |||| || ||||| | | |||||| Sbjct 10 AGTCTGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTATAATCTGAGAGAGTTCTT 69 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| ||||||||||| |||| ||| ||||| || || ||||||||| Sbjct 70 CCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCC 129 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTT---TCCACGTCTAAC 225672 || || || ||||| ||| ||| || || ||||| | || || || || | Sbjct 130 TTATCCTGAATCTTAGTCTTGACATTGTCAATAGTGTC---GCTTTGCTCGACATCGAGG 186 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | || |||| ||| | |||||| || Sbjct 187 GTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCATATT 230 >seq2010 Length=934 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| |||||||||||||| || || |||| |||||||||| | ||||| Sbjct 358 AGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTTCTT 299 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | ||||| || || || || | || ||| ||||| || || ||||||||| Sbjct 298 CCATCTTCCAATTGCTTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGGGATACCTTCC 239 Query 225616 TTGTCTTGGATCTT 225629 || |||||||| || Sbjct 238 TTATCTTGGATTTT 225 >seq741 Length=354 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 225522 TTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAA 225581 |||||| || | |||||| || | ||| ||||| ||||| || || ||||| |||||||| Sbjct 2 TTCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCAAGTTGCTTTCCAGCGAA 61 Query 225582 GATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGC 225641 |||||||| ||| ||||| || || ||||||||||| || || ||||| ||| || Sbjct 62 GATAAGTCTTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTGGTCTTGACGTT 121 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTAT 225701 || || ||||| || || || | || || ||||| || || | || || | Sbjct 122 GTCAATAGTGTCGCTCTGCTCGACATCAAGAGTAATAGTCTTTCCAGTGAGGGTCTTCAC 181 Query 225702 GAACACTTGCAT-TTTAT 225718 ||| | |||||| ||||| Sbjct 182 GAAGATTTGCATATTTAT 199 >seq47411 Length=283 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/105 (83%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCA 6824 ||||||| ||||||||||||||||| ||||| | |||| |||| || ||| | |||| Sbjct 173 TTGAGAGGATGATCAGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCA 115 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| ||||||| ||||||||||| |||| ||||| || ||| Sbjct 114 GCAGTGGGGAATATTGGACAATGGGCGGAAGCCTGATCCAGCAAT 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191666589911378