Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq52342 107 1e-18 >seq52342 Length=1312 Score = 107 bits (118), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||||| |||||||| || ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 1171 GTACTGAGCTCCGAAGTGTCTCCACTGGAAACCGTAAACAGGCCCGAGGTCACCTTCTTC 1112 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 |||| ||||| | | || | || ||||| || || || ||||||||||||| Sbjct 1111 TCTGTCAGTAAAGCCACATTGATCGAGGAATTCTCTAGAGCCATTTCCGTCCCAGATCTT 1052 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 ||| ||| ||| ||| | |||||||| ||| ||| | | |||||||| ||||| Sbjct 1051 TACTTTCTTGTCGCTGAGGTTCTTGGAGTTGGTGTCTCCTTTTAGGAACCACAAGAGCTC 992 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA-GGGGAAACTGTC 27730 || || || | |||| | || ||||| ||||| | ||||| ||||| Sbjct 991 TTCGACAACTCCTCTCCAGTACACATCTTTGGTTGTGAGCATTGGGAAGCTGTC 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369252367858397