Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq49069 102 6e-17 seq53863 86.0 5e-12 seq741 82.4 5e-11 >seq49069 Length=388 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| ||||| | |||| |||||| || ||||| |||||||| ||||| | | Sbjct 1 CCTCCTCTGAGTCTGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTATAATCTGAG 60 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || | |||| || || ||||| || || ||||| | | ||||| |||| || Sbjct 61 AGAGTTCTTCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 120 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||||||||| ||| ||||| ||| || ||| | || |||||| || | Sbjct 121 ATACCTTCCTTATCCTGAATCTTAGTCTTGACATTGT--CAATAGTGTCGCTTTGCTCGA 178 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||||| ||||| || || |||||||| |||||||||||||| Sbjct 179 CATCGAGGGTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 227 >seq53863 Length=275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||||| ||| | |||| ||| || || ||||||||||||||||| || | Sbjct 108 TCCACCTCTCAATCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 167 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| | |||| |||| ||||| || || |||||||| | |||||||||| ||| Sbjct 168 GAGAGTTCTTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGG 227 Query 44230 CACACCTTCCTTTTC 44244 | ||||||||| || Sbjct 228 AATACCTTCCTTATC 242 >seq741 Length=354 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || || ||||| || || ||||| | | ||||| |||| || | ||||||||| Sbjct 39 TCCTCAAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATACCTTCCTTA 98 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||| | | | || |||||| || || || | ||||| Sbjct 99 TCCTGAATCTTGGTCTTGACGTTGTCAATAGTGTCGCTCTGCTCGACATCAAGAGTAATA 158 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| |||||||||||||||||||||||||| Sbjct 159 GTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359742131158179