Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq49069 149 2e-30 seq49392 138 3e-27 seq741 129 1e-24 seq12826 91.5 4e-13 seq2010 91.5 4e-13 >seq49069 Length=388 Score = 149 bits (164), Expect = 2e-30 Identities = 167/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| ||||| || || || || || || || || |||||||| || || |||| Sbjct 224 CAAATCTTCGTAAAGACCCTTACTGGTAAGACCATTACCCTCGATGTCGAGCAAAGC--- 168 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || || ||||| ||||||||||| || ||||| ||||| || |||||| Sbjct 167 GACACTATTGACAATGTCAAGACTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAG 108 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| |||| |||||||| ||||| || || || || ||||| ||||| | ||||||||| Sbjct 107 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGACGGAAGAACTCTCTCAGATTATAAC 48 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || || | || | ||||||||| Sbjct 47 ATCCAGAAGGAATCTACCCTTCACTTGGTCCTCAGACTCAGA 6 >seq49392 Length=484 Score = 138 bits (152), Expect = 3e-27 Identities = 130/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || ||||| || |||||||| ||||||||||| || || || |||||| Sbjct 483 GACACCATTGACAACGTAAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAG 424 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 ||| |||| |||||||| ||||| || || || ||||| || || |||| |||| ||||| Sbjct 423 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGCAGAAC-CTTGTCCGACTATAA 365 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||| || || ||| | || |||||||||||| Sbjct 364 CATCCAAAAAGAAAGTACCCTCCATTTGGTCTTGAGACTCAGA 322 >seq741 Length=354 Score = 129 bits (142), Expect = 1e-24 Identities = 144/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA-AGCTCAGA 177982 ||||| |||||||| || ||||| ||||| || || || || || || || || | || Sbjct 190 CAAATCTTCGTGAAGACCCTCACTGGAAAGACTATTACTCTTGATGTCGAGCAGAGC-GA 132 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| || || |||||||| ||||||||||| || ||||| ||||| || |||||||| Sbjct 131 CACTATTGACAACGTCAAGACCAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAGCA 72 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | ||||||||||||| ||||| || || || |||||||| || | | || || || | Sbjct 71 AAGACTTATCTTCGCTGGAAAGCAACTTGAGGATGGAAGAACATTGTCAGACTACAATAT 12 Query 178103 CCAAAAAGAA 178112 || |||||| Sbjct 11 TCAGAAAGAA 2 >seq12826 Length=774 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || |||||||| || || || ||||||||| || | || || || ||||| Sbjct 189 AAGATCCAAGATAAAGAAGGTATTCCACCAGACCAGCAAAGATTAATTTTTGCTGGAAAG 248 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||||||||| || || |||| || ||| |||| || || || || || || Sbjct 249 CAATTGGAAGATGGAAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 308 Query 178125 CTTGTTTTGAGACTCAGA 178142 || || | ||||||||| Sbjct 309 CTCGTCCTCAGACTCAGA 326 >seq2010 Length=934 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || || || || ||||| ||||| || ||||||||| || | || || || ||||| Sbjct 225 AAAATCCAAGATAAGGAAGGTATCCCACCTGACCAGCAAAGATTAATTTTTGCAGGAAAG 284 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||||||||| || || ||||||| ||| |||| || || || || || || Sbjct 285 CAATTGGAAGATGGAAGAACCCTCTCCGATTACAACATCCAGAAGGAGTCCACTCTCCAC 344 Query 178125 CTTGTTTTGAGACTCAGA 178142 || || | ||||||||| Sbjct 345 CTCGTCCTCAGACTCAGA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202858469676878