Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7876 138 8e-28 >seq7876 Length=4354 Score = 138 bits (152), Expect = 8e-28 Identities = 290/423 (69%), Gaps = 11/423 (3%) Strand=Plus/Minus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 |||| |||| | ||| | |||||||| |||| ||| || |||||||| | || Sbjct 1548 TCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT--CTCT 1491 Query 101747 AGATTAGTGACA--TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATG 101804 | | ||| || |||| |||||| ||||| | ||||| || |||||||| || | Sbjct 1490 TCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAG 1431 Query 101805 GCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCA- 101863 | | || | ||||||||| ||||||||||||| ||| |||||||||||||||||| Sbjct 1430 GAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAG 1371 Query 101864 CAG--ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 ||| |||||||||| | ||| | || || || || | |||| || || || | Sbjct 1370 CAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAG 1311 Query 101922 AAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGT-ATCA 101980 | | |||||||||| ||| | || ||||| ||| || ||||| || | | || | Sbjct 1310 CAGCGTTCCAAGCACTCATCACAATTCTTCTGCTTGT-TGGATTGTTCTTCAACTGATTA 1252 Query 101981 ATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCG-CGCCCAACACCTTTATA 102039 || | | |||| ||||| ||||| |||| | |||||| || | | || ||| Sbjct 1251 ATGACGTCAGCCAATTAGTCAAATCCTTTTCCTGTGTAATCGTCGTGC-ATTGTTTCATA 1193 Query 102040 TTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCT 102099 | ||||| || || ||||| | || ||||| || || || ||||| | || ||||| Sbjct 1192 AGCAGCTCCAAAGTGTCTCCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCT 1133 Query 102100 GTC 102102 || Sbjct 1132 ATC 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361152741324113