Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5401 221 1e-52 seq18508 187 3e-42 seq2801 140 4e-28 >seq5401 Length=3445 Score = 221 bits (244), Expect = 1e-52 Identities = 603/919 (66%), Gaps = 6/919 (1%) Strand=Plus/Plus Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || || || ||||| ||||| |||| | | || | || |||||| | Sbjct 1442 ATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGATAATCTCACAG 1501 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | || || |||||||||||| | || | ||| || ||||| ||||| | Sbjct 1502 CACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTAGCGTGA 1561 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 ||||| || | ||| |||| || ||||||||||| || ||||| ||||| |||| ||| Sbjct 1562 TCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATAATGGCTTCCCAT 1621 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACA 53945 | |||| || ||| | ||| | | || | || | ||| | ||||| | Sbjct 1622 AGTTTTTGAGCTTTCATTGTT--TTTCTGCCAATTCCTTATTGCTCATACTTAGTATAGA 1679 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 ||| || || | || ||| | | | || ||| | || || | | Sbjct 1680 GAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGTTGGGGCAGAAAA 1739 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | ||| ||||||||| ||| |||| ||||| || ||||| |||||||| ||||| | Sbjct 1740 GTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAATCCAGAGAGCGA 1799 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||| | ||||| | ||| |||||||| || || ||||||| | || | ||||| Sbjct 1800 AAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTAAAGGAAAT 1859 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | | ||| | ||||| ||||||||||| || | | || | ||| | Sbjct 1860 CGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCTTTCTCTTGCCAC 1919 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 |||| || || | |||||||| || | ||| | ||||| | ||| || | | ||||| Sbjct 1920 CTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGGGTACGAGACCAT 1979 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 54305 | |||||| || || ||| || || ||| |||| | || || || | | Sbjct 1980 TACTGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATGTTGTGAACAGCCA 2039 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGATG 54364 |||| | || || || ||| || || || ||| || | |||| | |||||||||| Sbjct 2040 GACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAGGGTATCATAGATA 2098 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || | || || ||| |||| |||| || || || || ||||||| | | | Sbjct 2099 CCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACATTTATGGCTTAGGA 2158 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || || ||||||| || || || |||||| | ||| | || ||| Sbjct 2159 GTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTCACTCATGAGGTTG 2218 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || || ||||| || |||||| || || || ||||| | || | ||| ||| Sbjct 2219 TAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGACACTCTCATCAAC 2278 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| || ||||| ||||||||||| || | || || ||||||||| | ||||| Sbjct 2279 ATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTAGGATCTCTCCAAG 2338 Query 54605 GTTTTAAAACCAAAATAGT 54623 || || ||||| ||||||| Sbjct 2339 GTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 187 bits (206), Expect = 3e-42 Identities = 732/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Plus Query 53525 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 53583 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1396 Query 53584 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTAC 53643 |||||| |||| |||||| ||||| |||||||||||||||| || || | |||| Sbjct 1397 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1456 Query 53644 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC------CATCTATTACAAACAT 53697 ||| ||| | | | || | ||||| ||| | | | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || || |||||||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 || || ||||| || ||||| || | || |||||||| || | || || ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 53878 CGCTTTCCAGACGACA-CGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGT 53933 ||||| | || | |||||| | || ||| | |||| |||| | Sbjct 1697 TTAACCCCAGA-GCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCAT 1752 Query 53934 A-TAG-TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 53991 | | | |||| | || |||||||| || ||||| | | | ||| || ||||| Sbjct 1753 ACTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTC 1810 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAG 54050 || |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| | Sbjct 1811 ATTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTG 1869 Query 54051 GAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 || |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 1870 GAGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTT 1928 Query 54110 TTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 | || | ||||| | | || ||||||| ||||| ||||| | || | | | | | Sbjct 1929 CTGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 1987 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 ||| | ||| || || | ||| | |||||| ||||||| ||| |||| | || Sbjct 1988 TCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAA 2047 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||||||||| | ||||| || || || || || ||| ||| || || | Sbjct 2048 CATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCT 2107 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 | || | ||| | || || || || || || ||||| | || | ||| Sbjct 2108 TACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTT 2167 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTA 54406 ||| || ||| | || || || || || || | ||| || ||| || ||| | Sbjct 2168 TAAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAA 2222 Query 54407 GA---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 || ||| | ||| | ||||| | ||||| | || |||| || || |||| Sbjct 2223 GAACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAA 2280 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 |||| || | | | || ||| ||||||| ||||| || | || || ||||| Sbjct 2281 ACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAA 2340 Query 54522 TTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 | || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| Sbjct 2341 TACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 2398 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 ||| || | ||| | | ||||||| ||| | ||||||||||||| Sbjct 2399 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 140 bits (154), Expect = 4e-28 Identities = 385/582 (66%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 741 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 | || || ||||| ||||| || | | | ||||| ||| |||||||| |||| Sbjct 742 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 801 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 802 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 861 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | | || | | || || || | | || | || || |||||||| | Sbjct 862 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 921 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAA 24507 | || |||||| || || |||||||| | || || | || || | ||| |||| | Sbjct 922 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 981 Query 24508 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 982 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 1041 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 24626 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 1042 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 24685 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||| | || | ||||||| ||||||||||| ||||| || Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593555632548240