Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq21020 104 2e-17 seq22269 93.3 4e-14 seq5463 87.8 2e-12 seq18786 84.2 2e-11 >seq21020 Length=1175 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || || || ||||| ||| || || || || Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 506 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| ||| || |||||||||||| | || |||||| Sbjct 507 GACACTATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 566 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || ||||| ||||| |||||| | ||| | | || |||||| Sbjct 567 CAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 626 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || |||||||| |||||| |||| | |||| ||||||| Sbjct 627 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || |||||||||||||| ||||| || || |||||||| ||| Sbjct 768 GACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAACAACTTGAA 827 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || |||| || ||| ||||| || || ||||| |||||||| ||| |||| Sbjct 828 GACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGT 883 >seq22269 Length=1399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || || ||||| ||| || || || || Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || || || |||||| | || |||||| Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| ||||| || || || ||||| |||||| || |||| | | || ||||| Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| |||||||||||||| |||| Sbjct 831 ATCCAGAAAGAATCTACTCTTCATTTGGT 859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||||| ||||| || ||||| ||||| ||||| | ||| || |||| Sbjct 309 GATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGAC 368 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||| || |||||| |||| | || | ||||||| Sbjct 369 TACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || || ||||| ||| ||| || || || Sbjct 879 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 938 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| || || || || |||||| | || |||||| Sbjct 939 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 998 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || ||||| ||||| || ||| || |||| ||||| Sbjct 999 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1058 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||| || ||||| ||| |||| Sbjct 1059 ATCCAAAAGGAGTCAACTCTCCACTTGGT 1087 >seq5463 Length=1496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||||| ||||| || ||||| ||||| ||||| | ||| || |||| Sbjct 300 GATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGAC 359 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||| || |||||| |||| | || | ||||||| Sbjct 360 TACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || |||||||||||||||||||| || || || ||||| ||| Sbjct 1188 GACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAA 1247 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||| || |||| ||||| || || ||||| || ||||| ||| |||| Sbjct 1248 GACGGCAGAACCTTGTCCGACTACAACATCCAAAAGGAGTCAACTCTCCACTTGGT 1303 >seq18786 Length=1170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || || ||||| ||| ||| || || || Sbjct 521 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 462 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| || || || || |||||| | || |||||| Sbjct 461 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 402 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || ||||| ||||| || ||| || |||| ||||| Sbjct 401 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 342 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||| || ||||| ||| |||| Sbjct 341 ATCCAAAAGGAGTCAACTCTCCACTTGGT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428219257424765