Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2801 172 6e-38 seq21020 129 6e-25 seq18786 127 2e-24 seq22269 122 9e-23 seq5463 122 9e-23 >seq2801 Length=1577 Score = 172 bits (190), Expect = 6e-38 Identities = 390/580 (67%), Gaps = 11/580 (2%) Strand=Plus/Minus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGA-GGCGTCGTTCTGGACCGTCGAGGAGGTGGA 116691 ||||| ||| |||||||| | | || ||| | ||||||||| ||||| | || Sbjct 1162 GACATCTGGAAGATGTACAAGGAC-CAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGA 1104 Query 116692 CCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||| ||| ||| | || |||||| | | |||||||||||| | || || ||||| Sbjct 1103 CCTCGCCACCGACGTTAAGGATTGGGAGAGACTCAACGACAACGAGAGACACTTTATCAA 1044 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||| || ||||||||||| ||| ||||| |||||||||||||| || | | || | Sbjct 1043 GCACGTCCTTGCCTTTTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAG 984 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || | || || | || || || || ||||| ||||| || || || Sbjct 983 ATTCTGTACTGAAATCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGAT 924 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG---CTCTTC 116928 ||||||| | ||||| || | || || ||||||||||| | | | | | Sbjct 923 GGAGAACATTCACTCAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACA 864 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||| || || ||| | || || |||||| | || || || | ||||||| Sbjct 863 CGAGAAGGAGTTCC---TCTTCAAAGCCATCACTAACATCCCAGTTGTAACTAAGAAGGC 807 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | ||||| | | |||| || ||||| ||| | || | || Sbjct 806 TGAATGGGCCATTAAGTGGATTG--GTGAGAG-CGCTAGCTTCGCTGAGAGACTAATTGC 750 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||||| || |||||||| ||||||| || || ||| | | || || ||||| || Sbjct 749 TTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAA 690 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| || |||||||| || || ||||| || Sbjct 689 GAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 630 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||| |||||||| || | || | |||||| ||| Sbjct 629 TATGCACACTGACTTTGCTTGCCTTCTCTACAAGCACTTG 590 >seq21020 Length=1175 Score = 129 bits (142), Expect = 6e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||| |||| ||||| || || ||||| ||||| |||||||| | || || || || Sbjct 215 AAAAATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGA-GC 273 Query 40746 CACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | || | | | ||| |||||| || || | ||||||||||| ||||| | | Sbjct 274 CATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCG 333 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || || ||||||| | ||| || |||||| |||| |||| | |||||| ||||| Sbjct 334 ATCAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACT 393 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||||| | || || || Sbjct 394 ACAACATCCAGAAGGAGTCAACCCTTCA 421 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| | || ||||| ||||| | || || || || ||||| | ||||||||| | || Sbjct 675 ATGTAGATCTTCGTGAAAACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 734 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| || || || || | || || Sbjct 735 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 794 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| ||| || ||||| || || |||| | || | | |||||||||| Sbjct 795 CAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAAC 854 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 855 ATCCAAAAGGAGTCTACTCTCCA 877 >seq18786 Length=1170 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 981 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 922 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 921 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 862 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||||| | ||||| Sbjct 861 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 802 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 801 CAACATCCAGAAGGA 787 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| |||| || || |||| | Sbjct 521 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 463 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 462 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 404 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 403 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 344 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 343 ACATCCAAAAGGAGTCAACTCTCCA 319 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || || |||| | Sbjct 749 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 691 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | || || || || || ||| | || | Sbjct 690 AGACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATC 632 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||| | || || || || || || || | | ||||| | ||||||| Sbjct 631 AACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACA 572 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 571 ACATCCAAAAGGAGTCAACCCTTCA 547 >seq22269 Length=1399 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 191 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 250 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 251 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 310 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||| | |||||| Sbjct 311 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTA 370 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 371 CAACATCCAGAAGGA 385 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| |||| || || |||| | Sbjct 879 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 937 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 938 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 996 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 997 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 1056 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 1057 ACATCCAAAAGGAGTCAACTCTCCA 1081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| | |||||||| | | Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || ||||| | || || Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| ||| || || || || || || | | || || ||||||||| Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || || ||| Sbjct 831 ATCCAGAAAGAATCTACTCTTCAT 854 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || || |||| | Sbjct 423 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 481 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | || || || || || ||| | || | Sbjct 482 AGACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATC 540 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||| | || || || || || || || | | ||||| | ||||||| Sbjct 541 AACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACA 600 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 601 ACATCCAAAAGGAGTCAACCCTTCA 625 >seq5463 Length=1496 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 182 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 241 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 242 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 301 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||| | |||||| Sbjct 302 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTA 361 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 362 CAACATCCAGAAGGA 376 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| | |||||||| | | Sbjct 642 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 701 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || ||||| | || || Sbjct 702 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 761 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||| | || || || || || || || | | ||||| | ||||||||| Sbjct 762 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 821 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 822 ATCCAAAAGGAGTCAACCCTTCA 844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | ||||| || || ||||| || || ||||||||| |||| || || |||| | Sbjct 1096 ATGCAA-TCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 1153 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 1154 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 1212 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 1213 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 1272 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 1273 ACATCCAAAAGGAGTCAACTCTCCA 1297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || || |||| | Sbjct 414 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 472 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | || || || || || ||| | || | Sbjct 473 AGACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATC 531 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||| | || || || || || || || | | ||||| | ||||||| Sbjct 532 AACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACA 591 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 592 ACATCCAAAAGGAGTCAACCCTTCA 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515075176912880