Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq14578 111 2e-19 seq21020 104 4e-17 seq2750 100 4e-16 seq22269 98.7 1e-15 seq18786 98.7 1e-15 seq5463 98.7 1e-15 >seq14578 Length=3221 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 124543 AAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATA 124602 || |||| | || || |||||||||||||||| || || | | | | || |||| | Sbjct 922 AATTATTCGTTAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGA 863 Query 124603 CAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAA 124662 | ||| | || || | |||||| |||||||||| || || || ||||| ||||||| Sbjct 862 CCATTGAAGAATTTAAGCTTAAAATTTAAGATAAAGAGGGCATTCCTCCTGACCAACAAA 803 Query 124663 GGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTC 124722 | | || |||||||| | |||||||||| | | ||||| | ||| || |||||| Sbjct 802 GATTAATATTTGCAGGTATGTAATTAGAGGACGGAAGGACATTGGGAGACTACAATATTT 743 Query 124723 AAAAAGAATCAACTTTGCATTTGGTT 124748 ||| ||| ||||| | ||||| ||| Sbjct 742 AAACAGAGTCAACACTCCATTTAGTT 717 >seq21020 Length=1175 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || || Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 506 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||||||||||||||| ||||| ||||| Sbjct 507 GACACTATTGAAAACGTTAAGGCA-AAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 565 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || ||||| || || || || ||| | || ||| | |||| | ||| || || Sbjct 566 ACAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAA 625 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||| || | || |||||| | | || |||| ||||| Sbjct 626 TATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGGTAT 676 >seq2750 Length=4552 Score = 100 bits (110), Expect = 4e-16 Identities = 123/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 4333 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 4274 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 4273 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 4214 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-CATAAAAATTGA 124788 ||||| || | | |||||||| | || || ||| ||||||| Sbjct 4213 TTGGTCTTGAGACTTAGAGGTGGTGGTCAAGGTTCCATCCAAATTGA 4167 >seq22269 Length=1399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || Sbjct 423 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 482 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || |||||||| |||||||| || || |||||| Sbjct 483 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 542 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 543 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 601 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 602 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 652 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || | Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || |||||||| ||||| |||||| Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || || || ||||| ||| | || ||| | |||| | ||| || || Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | |||||||| | | | |||||||||| Sbjct 831 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGGTAT 880 >seq18786 Length=1170 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || Sbjct 749 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 690 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || |||||||| |||||||| || || |||||| Sbjct 689 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 630 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 629 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 571 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 570 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 520 >seq5463 Length=1496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || Sbjct 414 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 473 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || |||||||| |||||||| || || |||||| Sbjct 474 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 533 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 534 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 592 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 593 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 643 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || | Sbjct 642 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 701 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || |||||||| ||||| |||||| Sbjct 702 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 761 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 762 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 820 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 821 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755244821718400