Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2750 98.7 9e-16 seq21020 93.3 4e-14 >seq2750 Length=4552 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| |||||||||| || || |||||||| ||||||||||| || || | Sbjct 4202 TCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCC 4261 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || || | || |||||||| ||||||| | ||| ||||| || || || || || || Sbjct 4262 GTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTT 4321 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||| || ||||| | ||||| ||| || | ||| || || | || | Sbjct 4322 GTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAAT 4381 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATT 118751 || || ||||||| ||| || || || |||| ||| || ||||||| Sbjct 4382 AGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT-TTTTCTTCTATT 4429 >seq21020 Length=1175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | |||||| |||||||| | || ||||| || || |||||||| ||| Sbjct 447 TACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 388 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | || || | ||||||||||||| | ||||| | ||| |||||||| | Sbjct 387 AGAGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTG 328 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| || || || || | ||| | ||| || | ||| | Sbjct 327 GGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAA 268 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || ||||| || ||||| || || ||||| | ||| Sbjct 267 CATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACAT 219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | ||||| | |||||||| | ||||| ||||||||||| ||||| | | Sbjct 675 TACCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGT--C 618 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | || | | | ||| || || || || || ||| |||| || | ||| |||||||| Sbjct 617 TGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGG 558 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || || ||| || ||| ||||| | ||| | ||||| | ||| Sbjct 557 TGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTC 498 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || | ||| | || || ||||| || || || || || || ||||| Sbjct 497 GACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433712159931196