Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7876 113 4e-20 >seq7876 Length=4354 Score = 113 bits (124), Expect = 4e-20 Identities = 234/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 ||||| ||||| | || || || ||||| || |||||||||| |||||||||| |||| Sbjct 1137 AAGAGTGGGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATG 1196 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || |||| ||| ||||| | || |||| | || |||||| Sbjct 1197 AAACAATGCACGACGATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATC 1256 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | || | || |||| |||||||||| | | | || ||||||||| ||| Sbjct 1257 AGTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGAT- 1315 Query 20393 TGCCTTTAA----TGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| || ||||| | ||||| || || || || ||||||| ||| || | Sbjct 1316 ---CTTAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCT 1372 Query 20449 AATGAATTG---TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 ||| | | || || |||||||||||| |||| ||||||||| || ||| ||||| Sbjct 1373 GATGGAAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCT 1432 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||||| ||||| |||||| | || | || | ||| ||||||| || Sbjct 1433 TTCAACATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399075202775035