Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5401 159 7e-34 >seq5401 Length=3445 Score = 159 bits (176), Expect = 7e-34 Identities = 452/690 (66%), Gaps = 11/690 (2%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 |||| ||| || || | || | |||||| || |||||| ||| || | || || | Sbjct 2370 GATTGGGACTATGACTATTTCGGTTTCAAGACCTTGGAGAGATCCTACTTACTAAAGGTC 2311 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || |||||||| || || || |||||||||||| ||||| |||| || || ||| Sbjct 2310 AATTCAAAGATCGTTGAGAGACCACAACACATGTTGATGAGAGTGTCTGTAGGTATCCAC 2251 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 || | || || || | | || || |||| | |||||||| | ||| | || Sbjct 2250 AAAAAGGATATCGATTCAGCCATTGAAACTTACAACCTCATGAGTGACAGATGGTTCACT 2191 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTT 249047 |||||||| || || | ||||| || ||||| | | | | || | || ||||| Sbjct 2190 CATGCCACTCCTACTTTGTTCAATGCAGGTACTCCTAAGCCAT-AAATGTCAAGTTGCTT 2132 Query 249048 TCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGC 249107 || ||| ||| | |||||||| || |||| || ||||| || ||||| | | || Sbjct 2131 CCTCCTTATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTTAAGAACATCGC 2072 Query 249108 GAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGG 249167 |||||| |||| || || || | ||||| | || ||||||| |||| | || Sbjct 2071 CTTGATTTCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGCCACTGG 2012 Query 249168 TTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTT 249227 |||||||| || || ||||| |||| ||||| |||||||| | || || ||| Sbjct 2011 CAGTTACATCAAGGGCACTAATGGTCACAGTAATGGTCTCGTACCCATGCTCAGAGTCTT 1952 Query 249228 ---TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGC 249281 |||| || || || | || |||| | || || ||||||| || ||||| Sbjct 1951 CAATGAG---ACTGCTAGATATGTCGACCAAGGAGGTGGCAAGAGAAAGGGTTCATTCGC 1895 Query 249282 CATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAA 249341 || || |||||| |||||||| ||| | || || ||||| | | | |||||| | Sbjct 1894 TATTTACTTGGAACCATGGCACGCAGATGTCTTCGATTTCCTTTAACTAAGAAAGAATCA 1835 Query 249342 CGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTT 249401 ||| || ||| ||||| | ||| | || | || || ||| | | || | || Sbjct 1834 CGGTAAAGAGGAACAAAGAGCAAGAGACTTGTTTTTCGCTCTCTGGATTCCAGATCTATT 1775 Query 249402 CATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGA 249461 |||| | ||| |||| ||||| || ||||| ||| | | || ||| ||| || Sbjct 1774 CATGAAGAGAGTCCAGGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAAGCCAAGGG 1715 Query 249462 CCTCATCGATCTACACGGCGCCGACTTCGA 249491 |||| |||| | || ||| || ||||| Sbjct 1714 CCTCTTCGAAGTTCATGGCTAGGAATTCGA 1685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073458738075584