Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7876 145 2e-29 >seq7876 Length=4354 Score = 145 bits (160), Expect = 2e-29 Identities = 321/475 (68%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 35183 TTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAG 35242 |||||| |||||||| | |||| || || | | | ||| |||||||||||||| Sbjct 932 TTTGGATATCAAATGAGATATGATCTT---GAAGAAAGTTTCCCAATTCTCACTACCAAG 988 Query 35243 AAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGAC 35302 | |||||||||||||||| | || ||||| ||||| | | |||| ||||| | Sbjct 989 GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTTGGTTTGTTAAGGGCGATACAAAT 1048 Query 35303 GCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTT 35362 ||||| | || ||| | || ||||| || ||| ||| ||||| || | | || Sbjct 1049 GCCAAGAACTTAGCCGACAAAAAGATCAGAATTTGGGACGGTAATGCCTCAAGATAGTTC 1108 Query 35363 TTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTC 35422 | ||| || || || | ||||||| |||| | ||| | || || || || || ||| Sbjct 1109 CTTGACTCTATCGGCTTGAAAGATAGAGAAGAGTGGGATCTCGGGCCAGTCTATGGGTTC 1168 Query 35423 CAATGGCGTCATTTTGGTGCTGAATATGATAC-CTGTTCTTCCGATTATACTGGAAAGGG 35481 ||||| | || ||||| |||| ||||| || || | |||||| || ||||| || Sbjct 1169 TAATGGAGACACTTTGGAGCTGCTTATGAAACAATGCAC-GACGATTACACAGGAAAAGG 1227 Query 35482 TATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGA 35540 |||| ||||||| | | | || ||| |||| |||||| ||||| | Sbjct 1228 ATTTGACTAATTGGCTGACGTCATTAATCAGTTGA-AGAACAATCCAACAAGCAGAAGAA 1286 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | | |||| || ||||| || |||||| | |||||||||||||| ||||||| Sbjct 1287 TTGTGATGAGTGCTTGGAACGCTGCTGATCTTAAAAACATGGCTCTTCCTCCCTGCCACA 1346 Query 35601 TGACTGCTCAATTTTATGT---GGCTAATGGAGAATTGTCGTGCCAGTTGTATCA 35652 | ||| |||||||||| ||| ||||| | | || ||||| ||||||| Sbjct 1347 TTTTAGCTTAATTTTATGTTTCTGCTGATGGAAAGCTTTCCTGCCAAATGTATCA 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989300458516665