Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5401 215 6e-51 seq18508 192 7e-44 seq2801 167 3e-36 >seq5401 Length=3445 Score = 215 bits (238), Expect = 6e-51 Identities = 573/871 (66%), Gaps = 6/871 (1%) Strand=Plus/Plus Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 || |||||| ||| | || || |||||| ||||| | || | ||| || ||||| Sbjct 1490 ATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1549 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 ||||| |||||| || | ||| ||||||| ||||||||||| || ||||| ||| Sbjct 1550 CTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 63114 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT 63173 || |||| ||| | | |||| || ||| | | || | | || | || || Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCTTTCATTGTTTTTCTGCCAATTCCTTATTGCTCATAC 1669 Query 63174 AGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC--TAGGACATTCAT 63231 |||||| | |||||| || | || ||| | | | | | || ||| | Sbjct 1670 TTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGC--TTCGT 1727 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63291 || || | | | ||| ||||||||| ||| |||| ||||| || ||||| |||| Sbjct 1728 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAA 1787 Query 63292 TCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63351 |||| ||||| | ||| | ||||||| ||| |||||||| || || ||||||| | | Sbjct 1788 TCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1847 Query 63352 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63411 | | ||||| | | | ||| | ||||| ||||||||||| || || | || Sbjct 1848 GTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCT 1907 Query 63412 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63471 | ||| ||||| || || | |||||||| || | ||| | ||||| | ||| | Sbjct 1908 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGG 1967 Query 63472 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT 63531 | | | ||| || |||||| || || ||| || | ||| |||| | || | Sbjct 1968 GTACGAGACCATTACTGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATGT 2027 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-C 63590 | || | ||||| | || || || ||| || || || ||| || | |||| Sbjct 2028 TGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAGG 2086 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 || |||||||| || | || || || |||| |||| || || || || |||||| Sbjct 2087 GTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACATT 2146 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 | | || ||| || ||||| || || ||||||| || || || |||||| | ||| Sbjct 2147 TATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTCA 2206 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 | || ||||| || ||||| ||||| || |||||| || || || ||||| | Sbjct 2207 CTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGAC 2266 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || | ||| |||||||| || ||||| ||||| || || || | || | |||||| Sbjct 2267 ACTCTCATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTAG 2326 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 ||| | ||||| || || ||||| ||||||| Sbjct 2327 GATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 192 bits (212), Expect = 7e-44 Identities = 734/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Plus Query 62763 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62821 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1396 Query 62822 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62881 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1397 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1456 Query 62882 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62935 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT---TTCGTA 63172 ||||| || |||||| | || ||| | || | | ||| || Sbjct 1697 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 63173 -TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCAT 63231 | || | || | | || ||||| || ||||| | | | || || ||||||| Sbjct 1754 CTCGA-TGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCAT 1812 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGA 63290 |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 1813 TTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGA 1871 Query 63291 ATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 |||||||||| || ||| || ||||| | ||||| || || || || ||||||| | Sbjct 1872 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1930 Query 63350 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 || | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 1931 GAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1989 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | | ||| || || | ||| | |||||| ||||||| ||| |||| | |||| Sbjct 1990 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 2049 Query 63469 TTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 ||||||| | || |||| |||| || || ||||| ||| ||| || || | Sbjct 2050 TTGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 2108 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 2109 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 2168 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTAG 63645 || || ||| | || || || ||| || || | ||| || ||| || ||| || Sbjct 2169 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 2223 Query 63646 A---CATTT--GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | ||| | ||| | || ||||| | ||||| | || |||| || || ||||| Sbjct 2224 AACTCATCTAAGGTTTTG-GT-GTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 2281 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 2282 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 2341 Query 63761 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || |||| || | ||| | ||||||||| ||||| |||| |||| |||| || Sbjct 2342 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 2398 Query 63819 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 2399 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 167 bits (184), Expect = 3e-36 Identities = 391/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| |||||||| || || || ||| ||||| || |||||||| || || | || Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGC 742 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33775 ||| || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 743 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 802 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 33834 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 803 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 861 Query 33835 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33894 | | || | | || ||||| | | || | || || |||||||| | Sbjct 862 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 921 Query 33895 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 33954 | || ||| || || || |||||||| | || || | || || | ||| ||||| | Sbjct 922 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 981 Query 33955 ATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACAT 34014 ||| | || | || || || || ||||| || ||| || ||||| || | || | Sbjct 982 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 1041 Query 34015 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 34073 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 1042 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 34132 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 34133 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629641542362640