Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18508 262 4e-65 seq5401 132 5e-26 >seq18508 Length=3287 Score = 262 bits (290), Expect = 4e-65 Identities = 989/1527 (65%), Gaps = 51/1527 (3%) Strand=Plus/Plus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||| |||||||||||||||||||| |||| |||||||||||| | || ||| Sbjct 966 AACTCACCAGCTAATACTCTTCTTGTATATACATTGGAAGTATATGGTTCGAAGGTCTCG 1025 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | || | |||||| || ||||| ||||| || || | ||||| |||| Sbjct 1026 TTGTTTCCAAGGATCTAAGATGTCGAGGCAGTTGGCATAGGAGCAAGGAGAAGTGAATTT 1085 Query 37264 CTCAATCCATGTGTATTAATTC---TCTTTTTT-AGTTCATTCCAATCCCATAAATCTGT 37319 || ||| ||||||| | |||||| | | || | ||| || || ||| | Sbjct 1086 CTAGCTCC----GTATTAAATGACGTCTTTTCTCAATTGCTCCCAGTCGTATCTATCAGA 1141 Query 37320 T---GGGTTCTTTAACCACATATCATATTGTAGAATA--CCTTTACTCGCTGGAGAATCG 37374 || ||||| ||| | |||| ||| |||||| |||||| ||| || | Sbjct 1142 GCAAGGTTTCTTATTCCATAAATCAAATT--AGAATAGACCTTTAGAGAGTGGGGATCCT 1199 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGG 37432 | | || ||||| || || | | || ||| | | | | | || ||| | |||| Sbjct 1200 GGAAAAGTTTCATAGGGACCCTCGACCTTGGCT--TACTCCATTGAAGCTTCCATGGCGG 1257 Query 37433 CATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG 37492 ||| ||| || || |||||||| || || || | |||| || ||||||| Sbjct 1258 CATGATAGATAGTCTCGAAAATGAGTTCGTTCAACCTGAGAGCTTTTTGATCCTCGAATG 1317 Query 37493 CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 ||| | | || |||| || || || | ||||| || || || ||||| | Sbjct 1318 GGATCTTCAACATTTAAAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGT 1377 Query 37553 GTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTT 37609 || | ||| || ||||| ||| || ||||| |||||| ||||||| |||| Sbjct 1378 GTCTAAGATTTGAATTTCTAGC---TTCAGGAACAGGATAGTAATTGTTATCTATAATTT 1434 Query 37610 TATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAACTTGTCGAA--CATAAA-- 37664 |||||||||| ||| | | | || || | || | | ||||| || | |||| Sbjct 1435 TATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGT-AACTTCTCATAATCATATTCT 1493 Query 37665 TACGTTATTATTAACA--AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722 || ||| |||||| ||| || | || | |||||| |||||||||| ||||| ||| Sbjct 1494 TAGGTTTCCTTTAACACGAATCTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACT 1553 Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT---AATTGTT 37779 |||||| | |||||| | ||||| || || || ||| || || |||||| Sbjct 1554 TCATCTGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTA---GAACTCTTAATTGTG 1610 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || | ||| | ||||||||| |||| |||| |||||| || || ||||| || || Sbjct 1611 CCAAGATTTTACTAGTTGGATTTTCTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTA 1670 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCT 37899 || || |||||| ||| || || | ||| | | ||| || ||||| || Sbjct 1671 CCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTTAACAGTCTTG 1730 Query 37900 TTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA 37959 | | | | ||||| || || || || | ||| | ||| || | |||||| | Sbjct 1731 CGACCTCTACCAGTGGTTTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTA 1790 Query 37960 -TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTAC 38018 | | | | |||||| ||||| ||||||||| |||| ||| ||||||| | ||| || Sbjct 1791 GTAGTA-AGTCCTGGGCATTCATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAAC 1849 Query 38019 GCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTCTATATT 38077 | | ||| || | ||| || ||| | || ||| | || ||| | | ||||| | Sbjct 1850 TCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC-GTAGAAAAGGTCTCTAGCTCTATTCT 1908 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 |||| || || ||||||||| | || || ||| | ||||||||||||||||||| Sbjct 1909 CTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTT 1968 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | ||| | | | ||||| |||||| |||| || | || | ||||| | | Sbjct 1969 CAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGG 2028 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC--CGGA 38255 ||| ||| | | ||||||| || | | ||||| || | |||||| ||| | || Sbjct 2029 TGTCATTGAAAACCTTTAACATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGA 2088 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 | || ||| | ||||| || || | || | ||| || ||||| ||| || Sbjct 2089 TGTAGGAGT--CAGCAGCTCTTACATCGGACACTGAGACTCCGATACCACCAGCAGCCTT 2146 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 ||| || | ||| || |||||| || ||||| ||||| || || ||| || |||| Sbjct 2147 TGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATACCATCAATGGAGTCTTCTTTTAC 2206 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 | ||| | || ||| | ||| | ||| ||| ||||| | |||||| | || || Sbjct 2207 AGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTTGGTGTTCCAGAGTTAAACAGAGTTGG 2266 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAAT--AATTATATGTTTCTATTACATCATCT 38493 || ||||| | ||||| || ||| || ||| || || || | | || Sbjct 2267 AGTGGCATGAGTAAACCACAGTT--GACTCATCAAATCGTAAGTCTCGAACGCTGACTCA 2324 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 | || | |||||||| | | ||| ||||| ||||| || |||||||| || | Sbjct 2325 AGGTCTTCTTTATGAATACCAATACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGG 2384 Query 38554 ATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTA 38613 |||| || | |||||| || || | | |||| |||||| | | |||||||| | Sbjct 2385 ATTTGGTTGCCATCTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGTCA 2444 Query 38614 TATGAATAATCTCTATCGTATGCTATT 38640 || || |||||||| || ||||| Sbjct 2445 TAGTTGTAGTCTCTATCATAGACTATT 2471 >seq5401 Length=3445 Score = 132 bits (146), Expect = 5e-26 Identities = 349/528 (66%), Gaps = 6/528 (1%) Strand=Plus/Plus Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||| |||| ||| || | ||| | || ||| || ||| | | ||| | ||| || || Sbjct 1771 CATGAATAGATCTGGAATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTT 1830 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || ||||||||||| || |||||||| | ||| |||||||||||||| | || Sbjct 1831 ACCGTGATTCTTTCTTAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTA 1890 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || || ||| || ||||||| || | | ||||||| | || | ||| Sbjct 1891 AATAGCGAATGAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATT 1950 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | ||| | ||| ||||| | ||||||| | || || | || || ||| | Sbjct 1951 GAAGACTCTGAGCATGGGTACGAGACCATTACTGTGACCATTAGTGCCCTTGATGTAACT 2010 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 || | |||| || || | | || || | ||||| || |||||| || || Sbjct 2011 GCCAGTGGCTCTGATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAA 2070 Query 38325 AGCGCATTGTTTTAA-CGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383 ||| || | |||| |||||| | ||||| | || ||| ||||| || || | Sbjct 2071 GGCG-ATGTTCTTAAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGA 2129 Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||||| ||||||| ||| ||||| || || || || || ||||||| |||| Sbjct 2130 GGAAGCAACTTGACATTTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCAT 2189 Query 38444 GTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATATCACC 38501 | |||||||| | || || || | || || ||||| || | ||| ||||| Sbjct 2190 GAGTGAACCATCTGTC--ACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTT 2247 Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||| ||||||| ||| || ||||| | ||| ||||||||||| || Sbjct 2248 TTTGTGGATACCTACAGACACTCTCATCAACATGTGTTGTGGTCTCTC 2295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468393829748720