Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5401 237 2e-57 seq18508 178 2e-39 seq2801 140 4e-28 >seq5401 Length=3445 Score = 237 bits (262), Expect = 2e-57 Identities = 580/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 || |||||| ||| | || || |||||||||||| | || | ||| || ||||| Sbjct 1490 ATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1549 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 ||||| |||||| || | ||| ||||||| ||||||||||| || ||||| ||| Sbjct 1550 CTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 65966 || |||| ||| | | |||| || ||| | ||| | | || | || | || Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCTTTCATTGTT--TTTCTGCCAATTCCTTATTGCTCAT 1667 Query 65967 AGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 66024 | | ||||| | |||||| || | || ||| | | | || ||| | Sbjct 1668 ACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGT 1727 Query 66025 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 66084 || || | | | ||| ||||||||| ||| |||| ||||| || ||||| |||| Sbjct 1728 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAA 1787 Query 66085 TCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 66144 |||| ||||| | ||| || ||||| | ||| |||||||| || || ||||||| | | Sbjct 1788 TCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1847 Query 66145 GATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 66204 | | ||||| | | | ||| ||||| ||||||||||| || || | || Sbjct 1848 GTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCT 1907 Query 66205 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 66264 | ||| ||||| || || | |||||||| || | ||| | ||||| | ||| | Sbjct 1908 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGG 1967 Query 66265 GAATAATACCATTGGATGT-ACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATA 66323 | | | |||||| ||| |||||| || || ||| || || ||| | || | || Sbjct 1968 GTACGAGACCATTAC-TGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATG 2026 Query 66324 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 66383 || || | ||||| | || || || ||| || || || ||| || | |||| Sbjct 2027 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAG 2085 Query 66384 G-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 | |||||||||| || | || || ||| |||| |||| || || || || ||||| Sbjct 2086 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACAT 2145 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 || | | ||| || ||||| || || ||||||| || || || |||||| | || Sbjct 2146 TTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTC 2205 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 66562 | | || ||||| || ||||| ||||| || |||||| || || || ||||| | Sbjct 2206 ACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGA 2265 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 || | ||| |||||||| || ||||| ||||||||||| || | || | ||||| Sbjct 2266 CACTCTCATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTA 2325 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 |||| | ||||| || || ||||| ||||||| Sbjct 2326 GGATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 178 bits (196), Expect = 2e-39 Identities = 730/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Plus Query 65556 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 65614 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1396 Query 65615 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 65674 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1397 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1456 Query 65675 TTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------CGCTCATCTATTACAAACAT 65728 ||| ||| | | | || | ||||| || || | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG-TATCTCT--TTTCTCTTTCGTA 65965 ||||| || ||||| | | || ||| | |||| |||| || Sbjct 1697 TTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 65966 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 | | |||| | || || ||||| || ||||| | | | ||| || |||||| Sbjct 1754 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 1811 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGG 66082 | |||||||| | | ||| ||| | | | |||| |||| | |||| || ||||| || Sbjct 1812 TTTGGACACATGAGAGTCCAATCTTCAT-TTGCTTCAACTCTTCTCATGAAAAGATCTGG 1870 Query 66083 AATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141 | |||||||||| || ||| | ||||| | ||||| || || || || ||||||| Sbjct 1871 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1929 Query 66142 TAAGATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACT 66200 | || | ||||| | | || |||||| ||||| ||||| | || | || | | || Sbjct 1930 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 1988 Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 1989 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 2048 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 |||||||| | ||||| || || || || || ||| ||| || || | Sbjct 2049 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 2108 Query 66321 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 2109 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 2168 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAG 66438 || || ||| | || || || || || || | ||| || ||| || ||| || Sbjct 2169 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 2223 Query 66439 A---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 | ||| | ||| | ||||| | ||||| | || |||| || || ||||| Sbjct 2224 AACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 2281 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 2282 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 2341 Query 66554 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 2342 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 2398 Query 66612 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 2399 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 140 bits (154), Expect = 4e-28 Identities = 382/577 (66%), Gaps = 6/577 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 741 Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 36350 | || || ||||| |||||||| | | | || || ||| |||||||| |||| Sbjct 742 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 801 Query 36351 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 36410 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 802 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 861 Query 36411 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 36470 | | || | | || || || | | || | || || |||||||| | Sbjct 862 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 921 Query 36471 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 36530 | || |||||| || || |||||||| | || || | || || | ||| ||||| | Sbjct 922 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 981 Query 36531 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 36590 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 982 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 1041 Query 36591 GTTTTATAAAATATTTTTCGTT-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 36649 | || ||||| | | | ||||| | || | ||| | | |||||| || | || | | Sbjct 1042 GCTTGATAAAGTGTCTCTCGTTGTCGT-TGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 36708 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 36709 GTCATGATATTGAATTGGAAAAATAACAAATCTATTT 36745 ||| | || | ||||||| ||||||||||| ||| Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTT 1196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657988816020920