Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21020 93.3 4e-14 seq2750 91.5 1e-13 >seq21020 Length=1175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||||| ||||||||||| || || || | || || ||||| Sbjct 656 AACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTC 597 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || || || || |||| || | || |||||||| || || |||||||| || Sbjct 596 AAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCTTTATCTTG 537 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | ||| | ||||| | ||||| || |||| ||| | ||||| Sbjct 536 GATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTT 477 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || || ||||| ||||||||| || Sbjct 476 TCCGGTAAGGGTCTTAACGAAGATTTGCATACCT 443 >seq2750 Length=4552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||| | || || |||||||| ||||| ||||| || || || ||| Sbjct 4205 CAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTC 4264 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 4265 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 4324 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | ||| | | ||| | || || | ||||| || |||| || | | Sbjct 4325 -TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 4383 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| |||||||| || || ||||| || | ||| Sbjct 4384 TCTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495925331509600