Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5401 239 6e-58 seq18508 214 3e-50 seq2801 172 8e-38 >seq5401 Length=3445 Score = 239 bits (264), Expect = 6e-58 Identities = 582/874 (67%), Gaps = 12/874 (1%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || || ||| ||| | ||| || ||| |||||||| | || | ||| || ||||| Sbjct 1490 ATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1549 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||||| |||||| || | ||| | ||||| ||||||||||| || ||||| ||| Sbjct 1550 CTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCTT--TC 79841 || |||| ||| | | |||| || ||| | || | | | ||| | || || Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCTTTCATTGT----TTTTCTGCCAATTCCTTATTGCTC 1665 Query 79842 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 || | ||||| | |||||| || | || ||| ||| | || ||| Sbjct 1666 ATACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTC 1725 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 || || || | | | ||| ||||| ||| ||| |||| ||||| || ||||| || Sbjct 1726 GTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGG 1785 Query 79962 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 80021 |||||| ||||| | ||| | ||||| | ||| || ||||| || || ||||||| | Sbjct 1786 AATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCT 1845 Query 80022 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 || | ||||| | | | ||| | ||||| ||||||||||| || || | || Sbjct 1846 TAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACC 1905 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 80141 | || ||| ||||| || || | |||||||| || | ||| | ||||| | ||| Sbjct 1906 CTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCAT 1965 Query 80142 TGGAATAATACCATTGGATGT-ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 || | | |||||| ||| |||||| || || ||| || || ||| |||| | | Sbjct 1966 GGGTACGAGACCATTAC-TGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGA 2024 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 | || || | ||||| | || || || ||| || || || ||| || | ||| Sbjct 2025 TGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTA 2083 Query 80261 ACG-TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 | | |||||||||| || | || || || |||| |||| || || || || ||| Sbjct 2084 AGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGAC 2143 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 |||| | | ||| || ||||| || || ||||||| || || || |||||| | Sbjct 2144 ATTTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTG 2203 Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACC 80439 ||| || || ||||| || ||||| ||||| || |||||| || || || ||||| Sbjct 2204 TCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACA 2263 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 | || | ||| |||||||| || ||||| ||||||||||| ||| | || | ||| Sbjct 2264 GACACTCTCATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAG 2323 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 || ||| | ||||| || || ||||| ||||||| Sbjct 2324 TAGGATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 214 bits (236), Expect = 3e-50 Identities = 732/1120 (65%), Gaps = 36/1120 (3%) Strand=Plus/Plus Query 79435 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA 79494 || ||||| ||||||| |||||||| || || ||||| ||||| ||| ||| || | Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1397 Query 79495 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACT 79554 ||||| |||| |||||| ||||| |||||||||||||||| |||||| | | || | || Sbjct 1398 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTT-AGTAATTCT 1456 Query 79555 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC------CATCTATTACAAACAT 79607 ||| ||| | | || || | ||||| || | | | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667 || || || | ||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 || |||||||| |||||| || |||||| || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 79788 CGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTC--TTTCGTA 79844 ||||| || |||||| | || |||| | |||| |||| || Sbjct 1697 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAATCCAGGACATTCGT 79903 | | || | | || ||||| || ||||| | | || | ||| || ||||| | Sbjct 1754 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTA-AGTCCTGGGCATTCAT 1812 Query 79904 CAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAA 79963 |||||||| | | ||| ||| ||| | | |||| | |||| || ||||| ||| Sbjct 1813 TTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAG 1872 Query 79964 TCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| | Sbjct 1873 TCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTG 1931 Query 80023 AGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 || | ||||| | | || ||||||| ||||| ||||| | || | || | | |||| Sbjct 1932 AGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 1990 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 80141 | || ||| || || | ||| | |||||| ||||||| ||| |||| | ||||| Sbjct 1991 CTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACAT 2050 Query 80142 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 80201 |||||| | ||||| || || || || || ||| ||| || || | | Sbjct 2051 TGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTAC 2110 Query 80202 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261 || | ||| | || || || || || || ||||| | || | |||||| Sbjct 2111 ATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAA 2170 Query 80262 CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA-AG-TAGAAAACAGCTAGA- 80318 || ||| | || || || ||| || || | ||| || ||| || ||| ||| Sbjct 2171 AGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAGAA 2225 Query 80319 --CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 ||| | ||| | ||||| | ||||| | || |||| || || ||||||| Sbjct 2226 CTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACC 2283 Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434 | || | || | || ||| ||||| | ||||| || | || || |||||| | Sbjct 2284 ACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATAC 2343 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | | || | ||| | ||||||||| ||||| |||| ||| ||| | || || | Sbjct 2344 CAATACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGAT-TTGGTTGCCATCTTTA 2402 Query 80495 ACAA-GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 | || ||||| | ||||||| ||| | ||||||||||||| Sbjct 2403 AGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 172 bits (190), Expect = 8e-38 Identities = 392/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||| |||||||| ||| || || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||||| |||||||| || || || ||| || || || || |||||||| || || | | Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 741 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCC 50152 | || || |||| |||||||| | | || ||||| ||| |||||||| |||| Sbjct 742 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 801 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttt 50211 | || |||||||| ||||| || || ||| | ||||| || ||||| | | || Sbjct 802 ATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTC 860 Query 50212 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || | || | | || ||||| | | || | || || |||||||| Sbjct 861 TCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTC 920 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 || || ||| || || || |||||||| | || || | || || | ||| ||||| Sbjct 921 TCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAG 980 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 |||| | || | || || || || |||||||| ||| || ||||| || | || Sbjct 981 AATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACG 1040 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451 || || ||||| ||| | |||||| | ||| | | |||||| || | || | | Sbjct 1041 TGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 50510 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 50511 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718068016935320