Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07]
22,363 sequences; 67,158,112 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq21020 86.0 5e-12
>seq21020
Length=1175
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | || ||| | ||||| || | || || ||||| | |||||| || ||
Sbjct 673 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 614
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || || | ||| |||||||| || || | || ||||||||||| ||
Sbjct 613 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGG 554
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || |||| | || || | ||| ||||| | |||||||
Sbjct 553 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCGACG 494
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || |||||||| || || || || || ||||||||
Sbjct 493 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | ||||| || ||||| || | || |||||| || | ||||| |||||
Sbjct 445 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 386
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | |||| ||||| ||||| || || ||||| | || ||||||||||| ||
Sbjct 385 AGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 326
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || ||||| || |||| | ||||| | ||| || || | ||| ||
Sbjct 325 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACA 266
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || || || || || ||||| || || ||||||| ||||||
Sbjct 265 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATTTT 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381265658073054
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |