Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5401 248 1e-60 seq18508 221 2e-52 seq2801 149 8e-31 >seq5401 Length=3445 Score = 248 bits (274), Expect = 1e-60 Identities = 612/920 (67%), Gaps = 14/920 (2%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || || || ||||| ||||| |||| | || || | ||||| ||| ||| Sbjct 1445 GAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGATAATCTCACAGCAC 1504 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | || || |||||||||||| | || | ||| || ||||| ||||| |||| Sbjct 1505 AAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTAGCGTGATCC 1564 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || | || | ||||| ||||||||||| || ||||| ||||| |||| ||| | Sbjct 1565 TTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATAATGGCTTCCCATAGT 1624 Query 71884 ACTCGAGCCTTTATTATATTCTTGT--ATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 | |||| || ||| | || || || ||| | || | || | ||||| | Sbjct 1625 TTTTGAGCTTTCATTGTTTTTCTGCCAATTCCTTATTGCT--CATACTTAGTATAGAGAG 1682 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAAT----CCAGGACATTCATTCGGACACATC 71997 |||||| || || ||| | | | || || || | | ||| || || || | Sbjct 1683 CTTCGAATTC--CTAGCCATGAACT-TCGAAGAGGCCCTTGGC-TTCGTTGGGGCAGAAA 1738 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 | || ||| ||||| ||| | | |||| ||||| || ||||| |||||||| ||||| Sbjct 1739 AGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAATCCAGAGAGCG 1798 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 | ||| | ||||| | ||| || ||||| || || ||||||| | || | ||||| Sbjct 1799 AAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTAAAGGAAA 1858 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| | ||||| ||||||||||| || || | ||| | ||| Sbjct 1859 TCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCTTTCTCTTGCCA 1918 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||||||| || | ||| | ||||| | ||| || | | |||| Sbjct 1919 CCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGGGTACGAGACCA 1978 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||||| || || ||| || || ||| |||| | || ||| || | Sbjct 1979 TTACTGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATGTTGTGAACAGCC 2038 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGAT 72356 ||||| | || || || ||| || || || ||| || | |||| | |||||||||| Sbjct 2039 AGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAGGGTATCATAGAT 2097 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || | || || ||| |||| |||| || || || || ||||||| | | Sbjct 2098 ACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACATTTATGGCTTAGG 2157 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || || ||||||| || || || |||||| | ||| || || || Sbjct 2158 AGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTCACTCATGAGGTT 2217 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || ||||| ||||| || |||||| || || || ||||| | || | ||| || Sbjct 2218 GTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGACACTCTCATCAA 2277 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || ||||| ||||||||||| ||| | || | ||||||||| | ||||| Sbjct 2278 CATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTAGGATCTCTCCAA 2337 Query 72597 AGTTTTAAAACCAAAATAGT 72616 || || ||||| ||||||| Sbjct 2338 GGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 221 bits (244), Expect = 2e-52 Identities = 501/739 (68%), Gaps = 22/739 (3%) Strand=Plus/Plus Query 71518 GCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA 71577 || ||||| ||||||| || ||||| || || ||||||||||| ||| ||| || | Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1397 Query 71578 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACT 71637 ||||| |||| |||||| ||||| |||||||||||||||| ||||| || | || | || Sbjct 1398 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 1456 Query 71638 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACA--AACACG--- 71691 ||| ||| | | || || | ||||| || || | | || | |||||| Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATAT-TCTTAGGT-TTCCTTTAACACGAAT 1514 Query 71692 ---TTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGT 71748 || || |||| ||| || |||||||| || || || |||| | | || | ||| Sbjct 1515 CTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCG 1574 Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 | || ||||||||||| ||| || ||| || || || | ||||| | || ||| Sbjct 1575 ACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTT 1634 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 | || || ||||| || ||||| ||| | ||||||||||| || | ||||| ||||| Sbjct 1635 CTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATG 1694 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTTTTCTC--TTTCG 71925 || ||||| || |||||| | | ||||| | |||| |||| Sbjct 1695 ATTTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCA 1751 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCA 71985 || | | || | | || ||||| || ||||| | | | | ||| || |||||| Sbjct 1752 TACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 1811 Query 71986 TTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGA 72045 || |||||||| | | ||| ||| ||| | | |||| | |||| || ||||| ||| Sbjct 1812 TTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGA 1871 Query 72046 ATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 72104 |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| | Sbjct 1872 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1930 Query 72105 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 || | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 1931 GAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1989 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 || | ||| || || | ||| | |||||| ||||||| ||| |||| | |||| Sbjct 1990 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 2049 Query 72224 TTGGAATAATACCATTGGA 72242 ||||||| | ||||| || Sbjct 2050 TTGGAATCAATCCATTTGA 2068 >seq2801 Length=1577 Score = 149 bits (164), Expect = 8e-31 Identities = 389/583 (67%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| ||| || ||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||||| |||||||| || || || ||| || ||||| || |||||||| || || | | Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 741 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 42257 | || || ||||| |||||||| | | | || || ||| |||||||| |||| Sbjct 742 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 801 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttt 42316 | || |||||||| ||||| || || ||| | ||||| || ||||| | | || Sbjct 802 ATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTC 860 Query 42317 tCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || | || | | || ||||| | | || | ||||| |||||||| Sbjct 861 TCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTC 920 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 || || ||| || || || |||||||| | || || | ||| || | ||| ||||| Sbjct 921 TCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAG 980 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 |||| | || | || ||||| || |||||||| ||| || ||||| || | || Sbjct 981 AATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACG 1040 Query 42497 TGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATCTTTAGA 42555 || || ||||| | | | |||| | ||| | | | | |||||| || | || | | Sbjct 1041 TGCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGC 1099 Query 42556 TATATCTACTTCTTCTACCGTCCA-AAATGATGCTTCTGCCTTTTTATACATATTCCAGA 42614 | || | ||| || ||||| ||| | | |||| | || ||||| ||||||| Sbjct 1100 GAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGA 1158 Query 42615 TATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 | || | || | ||||| | ||||||||||| ||||| || Sbjct 1159 TGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670951591425880