Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq21020 114 1e-20 seq22269 102 8e-17 seq18786 102 8e-17 seq5463 102 8e-17 seq2750 91.5 1e-13 >seq21020 Length=1175 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| |||||||| ||||||| || || |||||| ||||||||||| Sbjct 871 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCG 812 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | ||| |||||||| || || ||||| ||||| || || ||| Sbjct 811 GCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTG 752 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | ||||| || || | ||| | ||||| |||||||| ||| Sbjct 751 ACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTT 692 Query 143168 TTTACGAATATTTGCATAGCT 143188 || ||||| || | |||| || Sbjct 691 TTCACGAAGATCTACATACCT 671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||| || |||| |||||||||||||| || ||||| || Sbjct 673 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 614 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| || || || |||| || | || |||||||| || Sbjct 613 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGG 554 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || ||| || | | ||| | ||||| | || || || Sbjct 553 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCGACG 494 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | ||||| ||||| | || || ||||| ||||||||| || Sbjct 493 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATACCT 443 >seq22269 Length=1399 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 404 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTC 345 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 344 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 285 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 284 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 225 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 224 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 185 >seq18786 Length=1170 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || ||||| || || |||||||| || || | || || |||||| Sbjct 768 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTC 827 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 828 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 887 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 888 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 947 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 948 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 987 >seq5463 Length=1496 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 395 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTC 336 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 335 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 276 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 275 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 216 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 215 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 176 >seq2750 Length=4552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || || || | || ||||||||||| ||||||||||| || || || ||| Sbjct 4205 CAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTC 4264 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | | || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 4265 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 4324 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || || | | ||| | || || | || ||||| |||| ||| | || Sbjct 4325 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 4384 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || || ||||| || | ||| Sbjct 4385 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506872670462160