Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2750 158 3e-33 seq22269 154 3e-32 seq21020 149 1e-30 seq5463 131 4e-25 seq18786 122 2e-22 seq12736 95.1 3e-14 >seq2750 Length=4552 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 4221 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 4280 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 4281 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 4340 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 4341 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 4400 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 4401 TTGACGAAGATCTACATTTT 4420 >seq22269 Length=1399 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | |||||||||||||| || || ||||| Sbjct 880 ATACCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCT 821 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| ||||| ||||| || || || || || |||||||| || Sbjct 820 GAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGT 761 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || |||||||| || ||||| || | |||||| ||| || Sbjct 760 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 701 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || ||||| || || || || || ||||| Sbjct 700 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 652 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 593 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 592 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 533 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || Sbjct 532 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCA 473 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || || ||||| Sbjct 472 ACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 423 >seq21020 Length=1175 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || || || ||||| || || ||||| Sbjct 448 ATACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCG 389 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| | ||||||||||| ||||| || ||||||||||| || Sbjct 388 GAGAGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGT 329 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || || ||||| || || |||||||| | |||||| || || Sbjct 328 GGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCA 269 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || ||||| ||||| || || || || || || | |||||| ||| Sbjct 268 ACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATTTTTTGT 212 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | ||||||||||| |||||||| ||||| Sbjct 676 ATACCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCT 617 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| ||||| || || || || || || ||||||||||| || Sbjct 616 GAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGT 557 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || |||||||| || || ||||| | || || || || Sbjct 556 GGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCG 497 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || ||||| || || || || || ||||| Sbjct 496 ACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | ||||| || || || || || ||||| Sbjct 901 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 842 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| |||||||| |||||||| || || || || || || |||||||| || || Sbjct 841 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 782 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| ||||| ||||| ||||| || | ||| ||| ||||| || Sbjct 781 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACG 722 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||||||||| || | ||||| || || |||| ||| Sbjct 721 TCCAAAGTGATAGTCTTACCGGTCAAGGTTTTCACGAAGATCTACAT 675 >seq5463 Length=1496 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 871 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 812 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 811 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGT 752 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || |||||||| || ||||| || | |||||| ||| || Sbjct 751 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 692 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || ||||| || || || || || ||||| Sbjct 691 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 642 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 643 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 584 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 583 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 524 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || Sbjct 523 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCA 464 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || || ||||| Sbjct 463 ACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 414 >seq18786 Length=1170 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 520 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 579 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 580 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 639 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || Sbjct 640 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCA 699 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || || ||||| Sbjct 700 ACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 749 >seq12736 Length=4188 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| ||||| |||| ||| ||||||||||| || |||||||| || ||| Sbjct 867 TCCACCTCTTAGTCTAAGAACTACATGCAATGTAGATTCCTTTTGAATATTGTAATCACT 926 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 |||||| |||| | ||||| || ||||||||||| || | |||| Sbjct 927 TAGAGTCTTACCTTTTTCTAATTACTTTCCAGCAAATATCAATCTCT 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151068494494004