Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5401 223 4e-53 seq18508 196 6e-45 seq2801 176 6e-39 >seq5401 Length=3445 Score = 223 bits (246), Expect = 4e-53 Identities = 576/872 (66%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 || |||||| ||| | || || |||||| ||||| | || | ||| || ||||| Sbjct 1490 ATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1549 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 ||||| |||||| || | ||| ||||||| ||||||||||| || ||||| ||| Sbjct 1550 CTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCCTTTCTCTTTCGTA 63121 || |||| ||| | | |||| || ||| | | || | ||||| || | | Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCTTTCATTGTTTTTCTGCCAATTCCTTA---TTGCTCA 1666 Query 63122 TAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 63179 || | ||||| | |||||| || | || ||| | | | || ||| Sbjct 1667 TACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCG 1726 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63239 | || || | | | ||| ||||||||| ||| |||| ||||| || ||||| ||| Sbjct 1727 TTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGA 1786 Query 63240 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 ||||| ||||| | ||| | ||||| | ||| |||||||| || || ||||||| | Sbjct 1787 ATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTT 1846 Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359 || | ||||| | | | ||| | ||||| ||||||||||| || || | || Sbjct 1847 AGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCC 1906 Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 | ||| ||||| || || | |||||||| || | ||| | ||||| | ||| Sbjct 1907 TTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATG 1966 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 || | | ||| || |||||| || || ||| || || ||| |||| | || Sbjct 1967 GGTACGAGACCATTACTGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATG 2026 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 || || | ||||| | || || || ||| || || || ||| || | |||| Sbjct 2027 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAG 2085 Query 63540 G-TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 | | ||||||||||| | || || || |||| |||| || || || || ||||| Sbjct 2086 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACAT 2145 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 || | | ||| || ||||| || || ||||||| || || || |||||| | || Sbjct 2146 TTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTC 2205 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 | | || ||||| || ||||| ||||| || |||||| || || || ||||| | Sbjct 2206 ACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGA 2265 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 || | ||| |||||||| || ||||| ||||||||||| || | || | ||||| Sbjct 2266 CACTCTCATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTA 2325 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 |||| | ||||| || || ||||| ||||||| Sbjct 2326 GGATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 196 bits (216), Expect = 6e-45 Identities = 735/1125 (65%), Gaps = 46/1125 (4%) Strand=Plus/Plus Query 62712 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62770 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1396 Query 62771 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62830 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1397 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1456 Query 62831 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62884 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT---TTCGTA 63121 ||||| || |||||| | || ||| | || | | ||| || Sbjct 1697 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 63122 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 63179 | | |||| | || || ||||| || ||||| | | | ||| || |||||| Sbjct 1754 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 1811 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGG 63238 | |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| || Sbjct 1812 TTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGG 1870 Query 63239 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63297 | |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 1871 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1929 Query 63298 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 | || | ||||| | | || ||||||| ||||| ||||| | || | || | | || Sbjct 1930 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 1988 Query 63357 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 1989 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 2048 Query 63417 ATTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475 |||||||| | || |||| |||| || || ||||| ||| ||| || || | Sbjct 2049 ATTGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCT 2107 Query 63476 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 | || | ||| | || || || || || || ||||| | || | ||| Sbjct 2108 TACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTT 2167 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTA 63593 ||| || ||| | ||||| || ||| || || | ||| || ||| || ||| | Sbjct 2168 TAAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAA 2222 Query 63594 GA---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 || ||| | ||| | ||||| | ||||| | || |||| || || |||| Sbjct 2223 GAACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAA 2280 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 |||| || | | | || ||| ||||| | ||||| || | || || ||||| Sbjct 2281 ACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAA 2340 Query 63709 TTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 | || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 2341 TACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCAT 2397 Query 63767 TTTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 2398 CTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 176 bits (194), Expect = 6e-39 Identities = 393/582 (68%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| ||| |||||||| ||| || || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| |||||||| || || || ||| ||||| || |||||||| || || | || Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGC 742 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33497 ||| || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 743 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 802 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 33556 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 803 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 861 Query 33557 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33616 | | || | | || ||||| | | || | || || |||||||| | Sbjct 862 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 921 Query 33617 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33676 | || ||| || || || |||||||| | || || | || || | ||| ||||| | Sbjct 922 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 981 Query 33677 ATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33736 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 982 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 1041 Query 33737 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 33795 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 1042 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 33796 ATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATGTTCCAGAT 33854 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 33855 GTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622773062897080