Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq21020 159 3e-34 seq22269 131 2e-25 seq18786 122 8e-23 seq5463 118 1e-21 seq2750 95.1 1e-14 >seq21020 Length=1175 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || ||||| || || || || | ||||| | || | ||| || |||||||||| Sbjct 684 TTCGTGAAAACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACCATC 743 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 ||| | |||||| ||||| ||||| ||||| || || |||||||||||||||||| Sbjct 744 GAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTC 803 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | || ||| |||||||| ||||| | |||| | |||||||| ||||| ||||| Sbjct 804 ATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAG 863 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||| |||| ||||||| ||||||||||| || Sbjct 864 GAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 901 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| | || | || || Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 506 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || |||||| || |||||||| || || ||||||||| Sbjct 507 GACACTATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 566 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || |||||| ||||| ||||||| |||| | | ||||| || Sbjct 567 CAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 626 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | || |||| || ||| | |||||||| Sbjct 627 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 673 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||| || | || || || || | ||||| || | ||||| | || | || || Sbjct 216 AAAATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCA 275 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || ||||| || | ||||| ||||| |||||||| || || || |||||| Sbjct 276 TCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGAT 335 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| |||||||||| || || ||||| | ||||| | |||| | || |||||| Sbjct 336 CAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTAC 395 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || | || ||||| ||||||| |||||||| Sbjct 396 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 445 >seq22269 Length=1399 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| | || | || | Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || ||||| ||||||| |||| | ||||| ||| Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||||||| | ||| ||||||| ||||| ||||| || Sbjct 831 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGG 877 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| |||| | || || Sbjct 879 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 938 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||| ||||| ||||| || || ||||||||| Sbjct 939 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 998 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | || || || ||||| ||||| | |||| | | |||||| ||| Sbjct 999 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1058 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| |||| ||||||| ||||||||||| || Sbjct 1059 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 1105 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 255 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 314 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||||| ||||||||||| | |||| | | |||||| ||| Sbjct 315 CAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTACAAC 374 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || |||| || ||||| |||||||| Sbjct 375 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 421 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | ||||| | || | || || Sbjct 423 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 482 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || || ||||||||| Sbjct 483 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 542 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| | || || ||||| ||||||| |||| | | || ||||| ||| Sbjct 543 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 602 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | || ||||||| ||| | ||||| || Sbjct 603 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 649 >seq18786 Length=1170 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| |||| | || || Sbjct 521 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 462 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||| ||||| ||||| || || ||||||||| Sbjct 461 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 402 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | || || || ||||| ||||| | |||| | | |||||| ||| Sbjct 401 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 342 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| |||| ||||||| ||||||||||| || Sbjct 341 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 295 Score = 122 bits (134), Expect = 8e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 917 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 858 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||||| ||||||||||| | |||| | | || ||||| ||| Sbjct 857 CAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAAC 798 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || |||| || ||||| |||||||| Sbjct 797 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 751 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | ||||| | || | || || Sbjct 749 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 690 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || || ||||||||| Sbjct 689 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 630 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| | || || ||||| ||||||| |||| | | || ||||| ||| Sbjct 629 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 570 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | || ||||||| ||| | ||||| || Sbjct 569 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 523 >seq5463 Length=1496 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| |||| | || || Sbjct 1096 ATGCAA-TCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 1154 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||| ||||| ||||| || || ||||||||| Sbjct 1155 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 1214 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | || || || ||||| ||||| | |||| | | |||||| ||| Sbjct 1215 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1274 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| |||| ||||||| ||||||||||| || Sbjct 1275 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 1321 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 246 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 305 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||||| ||||||||||| | |||| | | |||||| ||| Sbjct 306 CAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTACAAC 365 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || |||| || ||||| |||||||| Sbjct 366 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 412 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| | || | || | Sbjct 642 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 701 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 702 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 761 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| | || || ||||| ||||||| |||| | | || ||||| ||| Sbjct 762 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 821 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | || ||||||| ||| | ||||| || Sbjct 822 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 868 Score = 114 bits (126), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| | || | || | Sbjct 870 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 929 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 930 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 989 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || ||||| ||||||| |||| | ||||| || Sbjct 990 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTA-CAC 1048 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||| ||||||| | ||| ||||||| ||||| ||||| || Sbjct 1049 ATCCAGAAAG-ATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGG 1094 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | ||||| | || | || || Sbjct 414 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 473 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || || ||||||||| Sbjct 474 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 533 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| | || || ||||| ||||||| |||| | | || ||||| ||| Sbjct 534 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 593 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | || ||||||| ||| | ||||| || Sbjct 594 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 640 >seq2750 Length=4552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || |||||| ||||||||||| || || || |||||| Sbjct 4357 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 4298 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||||||| | | || || | | ||||| | |||| | | || || ||| Sbjct 4297 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 4238 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| |||| ||||| ||||||||||||| || Sbjct 4237 ATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGG 4191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478528595909360