Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5401 190 5e-43 seq7876 159 9e-34 >seq5401 Length=3445 Score = 190 bits (210), Expect = 5e-43 Identities = 648/996 (65%), Gaps = 14/996 (1%) Strand=Plus/Minus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 || ||||| |||||| | ||||| |||||| ||||||| || ||||| Sbjct 2364 GACTATGACTATTTCGGTTTCAAGACCTTGGAGAGATCCTACTTACTAAAGGTCAATTCA 2305 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | || ||||| | || || || ||||| ||| | || || | |||||||| | Sbjct 2304 AAGATCGTTGAGAGACCACAACACATGTTGATGAGAGTGTCTGTAGGTATCCACAAAAAG 2245 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCC 363558 ||| | ||| | || |||||||| || || || | |||| | ||||| || ||| Sbjct 2244 GATATCGATTCAGCCATTGAAACTTACAACCTCATGAGTGACAGATGGTTCACTCATGCC 2185 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || || ||| |||||| || |||| ||| ||| | ||||| |||||| || || Sbjct 2184 ACTCCTACTTTGTTCAATGCAGGTACTCCTAAGCCATAAATGTCAAGTTGCTTCCTCCTT 2125 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 | ||||||||||| || ||| | ||||||| ||| || |||||||| || | ||| Sbjct 2124 ATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTTAAGAACATCGCCTTGATT 2065 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTA 363737 || || || || || | ||| | | | ||||| | | | ||| | |||||| Sbjct 2064 TCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGCCACTG-GCAGTTA 2006 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| ||||| || || ||||| || || |||||||| | || || | | Sbjct 2005 CATCAAGGGCACTAATGGTCACAGTAATGGTCTCGTACCCATGCTCAGAGTCTTCAATGA 1946 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||||| || || |||||||| || || || ||| | || || | || ||||| || | Sbjct 1945 GACTGCTAGATATGTCGACCAAGGAGGTGGCAAGAGAAAGGGTTCATTCGCTATTTACTT 1886 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAG 363916 || || || || ||| | || || || ||| | || | || || ||| || |||| Sbjct 1885 GGAACCATGGCACGCAGATGTCTTCGATTTCCTTTAACTAAGAAAGAATCAC-GGTAAAG 1827 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 ||||| | ||| | || |||| | || || ||| || | || | || |||||| Sbjct 1826 AGGAACAAAGAGCAAGAGACTTGTTTTTCGCTCTCTGGATTCCAGATCTATTCATGAAGA 1767 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA-GGTCTTTCC 364035 | || |||| | | ||| |||| || ||||| ||||| | | | || || | | Sbjct 1766 GAGTCCAGGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAA-GCCAAGGGCCTCTTC 1708 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || || || | || | | ||||| || |||||||| | |||| | Sbjct 1707 GAAGTTCATGGCTAGGAATTCGAAGCTCTCTATACTAAGTATGAGCAATAAGGAATTGGC 1648 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 | || ||||| || || || |||||| ||||| || || || || ||||| || Sbjct 1647 AGAAAAACAATGAAAGCTCAAAAACTATGGGAAGCCATTATTGAATCACAAATTGAAACT 1588 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCT 364214 ||||| || || ||||||||||| || || || ||| ||||| |||||| || |||| Sbjct 1587 GGAACTCCATACATGTTGTACAAGGA-TCACGCTAACAGCAAGAGCAACCAAAAGAACCT 1529 Query 364215 TGGTACAATTCAGCAGAG---CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 || || | ||| |||| |||| | || |||||||| || |||||| | || || Sbjct 1528 CGGAACCA-TCA--AGAGTTCCAACTTGTGCTGTGAGATTATCGAGTACACCTCCCCAGA 1472 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTAC 364331 || || || || |||||||| || || | || || | || || |||||| Sbjct 1471 TGAAGTAGCTGTTTGCAACCTTGCTTCCATATCTCTACCTAGATACGTGAAGGATGGTGT 1412 Query 364332 TTTTGACCACCAGCATCTTTATGACGTAACCTATCA 364367 ||| ||| | || | ||| | | || || ||||| Sbjct 1411 TTTCGACTATGAGAAACTTCACAAAGTTACTTATCA 1376 >seq7876 Length=4354 Score = 159 bits (176), Expect = 9e-34 Identities = 404/602 (67%), Gaps = 23/602 (4%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATAT-TGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||| ||| ||||||| || ||| || | | |||| ||| | | || |||||| | | Sbjct 967 TTTCCCAATTCTCACTACCAAG-GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTT 1025 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTT-GCAGCAAAAAATGTAAAAATTTGG 111431 ||||| || || ||||||||| || |||||| || | ||||| | | ||||||| Sbjct 1026 GGTTTGTTAAGGGCGATACAAATGCCAA-GAACTTAGCCGACAAAAAGATCAGAATTTGG 1084 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGG 111490 || || |||| ||| | | || || || || | || |||| || | ||||| | Sbjct 1085 GACGGTAATGCCTCAAGATAGTTCCTTGACTCTATCGG-CTTGAAAGATAGAGAAGAGTG 1143 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||| ||||| || || || ||||| | |||||||| || | || |||| || Sbjct 1144 GGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATGAAACAAT 1203 Query 111551 GCACGACTCATATGATT-CACAGGGAACTGATC-----AATTACAGAATGTCATTGATCA 111604 ||||||| |||| |||||| || ||| |||| | |||||| |||| Sbjct 1204 GCACGAC------GATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATCA 1257 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 | |||||||| ||||| | | ||| | |||||||| |||||| | || | Sbjct 1258 GTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGATCT 1317 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG---ACGG 111721 |||| ||||| ||||| || || || || | | |||||||| | | || Sbjct 1318 TAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCTGATGG 1377 Query 111722 GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | |||||| |||||||||||||| ||||| |||||| ||||||||| |||| || || Sbjct 1378 AAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCTTTCAA 1437 Query 111782 TATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC-ATTTTACAAATCTCAAACCGG 111840 ||||| ||||| || | | || ||| | | || | | | | | || | || | Sbjct 1438 CATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGTGTGCGGAT-TGAAGAGAG 1496 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTA 111900 | || |||||||| || | || ||||| ||||| || | ||| || |||| ||||| Sbjct 1497 GAGAGTTCATTCATGTATTAGGTGATGCTCATGTATATAAAAATCATGTTGAACCACTTC 1556 Query 111901 AA 111902 || Sbjct 1557 AA 1558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302980155387866