Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5463 89.7 5e-13 seq22269 86.0 6e-12 seq18786 86.0 6e-12 >seq5463 Length=1496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || || || || | ||| ||||||||||| |||||||| || || Sbjct 868 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 809 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || || ||||| || || | || | | || || || || ||| Sbjct 808 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 749 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | ||||| | | ||||| | Sbjct 748 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 689 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 688 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 642 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| || |||||||| ||| || ||| | ||| Sbjct 397 AGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCT 338 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| ||| |||| | | || || || || ||||||||||| ||||| Sbjct 337 TCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 278 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | || | ||| Sbjct 277 TGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTC 218 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 || || || || || || ||||| || |||||| ||||||| Sbjct 217 TTGCCTGTGAGGGTCTTAACGAAGATTTGCATG-TTTATTTT 177 >seq22269 Length=1399 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| || |||||||| ||| || ||| | ||| Sbjct 406 AGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCT 347 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| ||| |||| | | || || || || ||||||||||| ||||| Sbjct 346 TCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 287 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | || | ||| Sbjct 286 TGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTC 227 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 || || || || || || ||||| || |||||| ||||||| Sbjct 226 TTGCCTGTGAGGGTCTTAACGAAGATTTGCATG-TTTATTTT 186 >seq18786 Length=1170 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| || |||||||| || || | ||| | ||| Sbjct 766 AGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCT 825 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| ||| |||| | | || || || || ||||||||||| ||||| Sbjct 826 TCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 885 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | || | ||| Sbjct 886 TGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTC 945 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 || || || || || || ||||| || |||||| ||||||| Sbjct 946 TTGCCTGTGAGGGTCTTAACGAAGATTTGCATG-TTTATTTT 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471880854721920