Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5401 250 3e-61 seq18508 196 6e-45 seq2801 145 1e-29 >seq5401 Length=3445 Score = 250 bits (276), Expect = 3e-61 Identities = 583/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || |||||| ||| | || || |||||||||||| | || | ||| || ||||| Sbjct 1490 ATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1549 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 ||||| |||||| || | ||| ||||||| ||||||||||| || ||||| ||| Sbjct 1550 CTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 62977 || |||| ||| | | |||| || ||| | ||| | | || | || | || Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCTTTCATTGTT--TTTCTGCCAATTCCTTATTGCTCAT 1667 Query 62978 AGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 | | ||||| | |||||| || | || ||| | | || || ||| | Sbjct 1668 ACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGT 1727 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63095 || || | | | ||| ||||||||| ||| |||| ||||| || ||||| |||| Sbjct 1728 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAA 1787 Query 63096 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63155 |||| ||||| | ||| | ||||| | ||| |||||||| || || ||||||| | | Sbjct 1788 TCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1847 Query 63156 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63215 | | ||||| | | | ||| | ||||| ||||||||||| || || | || Sbjct 1848 GTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCT 1907 Query 63216 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63275 | ||| ||||| || || | |||||||| || | ||| | ||||| | ||| | Sbjct 1908 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGG 1967 Query 63276 GAATAATACCATTGGATGT-ACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 | | | |||||| ||| |||||| || || ||| || || ||| |||| | || Sbjct 1968 GTACGAGACCATTAC-TGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATG 2026 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394 || || | ||||| | || || || ||| || || || ||| || | |||| Sbjct 2027 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCG-ATGTTCTTAAG 2085 Query 63395 G-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 | |||||||||| || | || || ||| |||| |||| || || || || ||||| Sbjct 2086 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACAT 2145 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 || | | ||| || ||||| || || ||||||| || ||||| |||||| | || Sbjct 2146 TTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTC 2205 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63573 | | || ||||| || ||||| ||||| || |||||| || || || ||||| | Sbjct 2206 ACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGA 2265 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 || | ||| |||||||| || ||||| ||||||||||| || | || | ||||| Sbjct 2266 CACTCTCATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTA 2325 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 |||| | ||||| || || ||||| ||||||| Sbjct 2326 GGATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 196 bits (216), Expect = 6e-45 Identities = 734/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Plus Query 62567 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62625 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1396 Query 62626 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62685 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1397 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1456 Query 62686 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62739 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 62920 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTA 62976 ||||| || |||||| | || ||| | |||| |||| || Sbjct 1697 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 62977 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 | | |||| | || || ||||| || ||||| | | ||||| || |||||| Sbjct 1754 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 1811 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGG 63093 | |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| || Sbjct 1812 TTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGG 1870 Query 63094 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 | |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 1871 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1929 Query 63153 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63211 | || | ||||| | | || ||||||| ||||| ||||| | || | || | | || Sbjct 1930 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 1988 Query 63212 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 1989 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 2048 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 |||||||| | ||||| || || || || ||| ||| ||| || || | Sbjct 2049 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 2108 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 2109 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 2168 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAG 63449 || || ||| | || || || || || || | ||| || ||| || ||| || Sbjct 2169 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 2223 Query 63450 A---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | ||| | ||| | ||||| | ||||| | || |||| || |||||||| Sbjct 2224 AACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 2281 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 2282 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 2341 Query 63565 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 2342 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 2398 Query 63623 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 2399 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq2801 Length=1577 Score = 145 bits (160), Expect = 1e-29 Identities = 386/582 (66%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 623 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 682 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 32793 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 683 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 741 Query 32794 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 32853 | || || ||||| |||||||| | | | ||||| ||| |||||||| |||| Sbjct 742 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 801 Query 32854 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 32913 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 802 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 861 Query 32914 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 32973 | | || | | || || || | | || | || || |||||||| | Sbjct 862 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 921 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33033 | || |||||| || || ||||| || | || || | || || | ||| ||||| | Sbjct 922 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 981 Query 33034 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 982 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 1041 Query 33094 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 33152 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 1042 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 1100 Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 33211 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 1101 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 1159 Query 33212 GTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| | || | ||||||| ||||||||||| ||||| || Sbjct 1160 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633454876094800