Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq21020 122 8e-23 seq2750 107 2e-18 seq14578 84.2 2e-11 >seq21020 Length=1175 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || ||||||| | || || ||| | || Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 506 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| ||| ||| || |||||||| || ||||| || ||| Sbjct 507 GACACTATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 566 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | |||| || |||||||| ||| | ||||||| | || | || |||||| Sbjct 567 CAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 626 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || || || || || || | |||||||| Sbjct 627 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 673 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || || || ||||||||||| | ||||| | || || || | || Sbjct 675 ATGTAGATCTTCGTGAAAACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 734 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| || ||| ||||| ||||| |||||||| || Sbjct 735 GACACCATCGAG--AATGTCAAAGC-CAAGATCCAGGACAAGGAAGGTATTCCACCCGAT 791 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || ||||| |||||| | ||||| | | ||| || |||| ||| Sbjct 792 CAACAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTAC 851 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || || || || || || || ||||| || Sbjct 852 AACATCCAAAAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 901 >seq2750 Length=4552 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 4422 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 4363 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 4362 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 4304 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 4303 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 4244 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||||||||| || || || || || | || || ||||| || Sbjct 4243 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGG 4191 >seq14578 Length=3221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 25003 AAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACA 25062 || |||| || || || || || || ||| | |||||| || | | || ||| | Sbjct 922 AATTATTCGTTAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGA 863 Query 25063 CTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGC 25122 | || || | | |||| ||||| || ||||| || ||||| ||||||||||| Sbjct 862 CCATTGAAGAATTTAAGCTTAAAATTTAAGATAAAGAGGGCATTCCTCCTGACCAACAAA 803 Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 | | || ||||| || | ||||||| || | | || |||| || ||||||||| Sbjct 802 GATTAATATTTGCAGGTATGTAATTAGAGGACGGAAGGACATTGGGAGACTACAATATTT 743 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| ||| || || || |||||||| || || || ||||| ||| Sbjct 742 AAACAGAGTCAACACTCCATTTAGTTCTTAGACTCAGAGGTGGA 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433209896859845