Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21020 131 4e-25 seq22269 120 7e-22 seq18786 120 7e-22 seq5463 116 9e-21 seq2750 116 9e-21 >seq21020 Length=1175 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| ||||| | || || | ||| ||||| | ||| || || ||||| Sbjct 638 TTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAA 579 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| |||||| ||||||||||| ||||| || || || ||||| Sbjct 578 GATAAGTCTCTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTT 519 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| || | || || || || ||||| ||||| ||||| || ||||| || Sbjct 518 TTCAATAGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAAC 459 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 458 GAAGATTTGCAT 447 >seq22269 Length=1399 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | || | |||||||| | ||| || || |||||| Sbjct 1069 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAG 1010 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || |||| ||| || || ||||||||| Sbjct 1009 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTT 950 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 949 TCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACG 890 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 889 AAGATTTGCAT 879 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| || || | ||||| || |||||| ||||| || ||||| | Sbjct 877 CCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 818 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||| ||||| |||||||| || | |||||| |||| Sbjct 817 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 758 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | ||| | || || Sbjct 757 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 698 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 697 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | |||| || ||| || ||||| || ||||||| Sbjct 421 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 362 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||||||| | ||| || || |||||||| || | |||||| |||| Sbjct 361 AAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 302 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || || ||||| || | || | || || Sbjct 301 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 242 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 241 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 195 >seq18786 Length=1170 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | || | |||||||| | ||| || || |||||| Sbjct 331 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAG 390 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || |||| ||| || || ||||||||| Sbjct 391 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTT 450 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 451 TCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 510 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 511 AAGATTTGCAT 521 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | |||| || ||| || ||||| || ||||| Sbjct 751 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 810 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||| | ||| || || |||||||| || | |||||| |||| Sbjct 811 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 870 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || || ||||| || | || | || || Sbjct 871 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 930 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 931 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 977 >seq5463 Length=1496 Score = 116 bits (128), Expect = 9e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | || | |||||||| | ||| || || |||||| Sbjct 1285 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAG 1226 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || |||| ||| || || ||||||||| Sbjct 1225 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTT 1166 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 1165 TCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACG 1106 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1105 AAGAT-TGCAT 1096 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | |||| || ||| || ||||| || ||||||| Sbjct 412 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 353 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||||||| | ||| || || |||||||| || | |||||| |||| Sbjct 352 AAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 293 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || || ||||| || | || | || || Sbjct 292 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 233 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 232 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 186 Score = 100 bits (110), Expect = 7e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| || || | ||||| || | |||| ||||| | ||||| | Sbjct 1094 CCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGAT-CTTTCTGGATGTG-TAGTCTGAA 1037 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||| ||||| |||||||| || | |||||| |||| Sbjct 1036 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 977 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | ||| | || || Sbjct 976 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 917 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 916 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 870 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| || || | ||| ||||| | ||| ||||| || || Sbjct 832 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 773 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || || ||||| || || || || || Sbjct 772 ATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 713 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| ||||| || ||||||||| Sbjct 712 TCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 653 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 652 AAGATTTGCAT 642 >seq2750 Length=4552 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 4226 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 4285 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 4286 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 4345 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 4346 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 4405 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 4406 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 4436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179316398417114