Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq22269 89.7 6e-13 seq18786 89.7 6e-13 seq5463 82.4 8e-11 >seq22269 Length=1399 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||| ||| ||| ||||| | | | ||||| || | || ||||||||| || || Sbjct 1115 AATTGATCAACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTT 1056 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || | || || | |||| || || |||||||||||||| || |||| || || Sbjct 1055 GTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTG 996 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 |||| ||| | | ||||||||| ||| || || | | | | ||||| Sbjct 995 ATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGA 936 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||||| |||||||| || || || || ||||| || ||||||||||| Sbjct 935 TGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 879 >seq18786 Length=1170 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||| ||| ||| ||||| | | | ||||| || | || ||||||||| || || Sbjct 285 AATTGATCAACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTT 344 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || | || || | |||| || || |||||||||||||| || |||| || || Sbjct 345 GTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTG 404 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 |||| ||| | | ||||||||| ||| || || | | | | ||||| Sbjct 405 ATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGA 464 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||||| |||||||| || || || || ||||| || ||||||||||| Sbjct 465 TGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 521 >seq5463 Length=1496 Score = 82.4 bits (90), Expect = 8e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||| ||| ||| ||||| | | | ||||| || | || ||||||||| || || Sbjct 1331 AATTGATCAACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTT 1272 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || | || || | |||| || || |||||||||||||| || |||| || || Sbjct 1271 GTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTG 1212 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 |||| ||| | | ||||||||| ||| || || | | | | ||||| Sbjct 1211 ATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGA 1152 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||||| |||||||| || || || || ||||| || |||| |||||| Sbjct 1151 TGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGA-TTGCAT 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543060951651920