Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq18508 127 2e-24 >seq18508 Length=3287 Score = 127 bits (140), Expect = 2e-24 Identities = 325/490 (66%), Gaps = 6/490 (1%) Strand=Plus/Minus Query 93881 GGTATAC-CATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCT 93939 ||| ||| |||| |||| || || ||||| ||| | || || || || ||||| | Sbjct 2283 GGTTTACTCATG-CCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATGAGT 2225 Query 93940 TCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAG 93999 || || ||| || | || || | |||||||| || ||||| || | | || Sbjct 2224 TCTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTTAAAA 2165 Query 94000 GACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATC--AGTGTCCACGACGTAC 94057 | ||| | |||||||| || || || ||||| || ||||||| || ||| Sbjct 2164 TAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTCTCAGTGTCC--GATGTAA 2107 Query 94058 GTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGC 94117 | || | ||||||||| | ||||| || || || || || | | || ||| Sbjct 2106 GAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGT 2047 Query 94118 TCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTT 94177 | ||| ||||| || | || | |||||||| | |||||||| | || ||||| Sbjct 2046 TAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAAGGGAG 1987 Query 94178 CTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAA 94237 ||||||| |||||| | || || |||||||| || | | | ||| | | || ||| Sbjct 1986 CTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTCAGAA 1927 Query 94238 AGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 |||| ||||| || || | | || || |||||||| ||||||||||| ||| |||| Sbjct 1926 AGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAG 1867 Query 94298 ACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAAT 94357 | ||||| |||| | | || || ||| | |||| ||| | ||||| ||||||| Sbjct 1866 ATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAATGAAT 1807 Query 94358 GTCCCGGACT 94367 | || ||||| Sbjct 1806 GCCCAGGACT 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494584906313480