Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq21020 114 9e-21 seq18786 114 9e-21 seq5463 113 3e-20 seq22269 109 4e-19 seq2750 93.3 3e-14 >seq21020 Length=1175 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 901 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 842 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| | |||||| || ||| | || | | ||||| ||| |||| Sbjct 841 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 782 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| ||| | || || || ||| ||| ||| Sbjct 781 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACG 722 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| |||| ||||| || || || | |||| Sbjct 721 TCCAAAGTGATAGTCTTACCGGTCAAGGTTTTCACGAAGATCTACATA 674 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | ||| || ||||||||||| |||||||| || ||||| || Sbjct 673 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 614 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| ||||| ||| | || | | |||||| ||| ||| Sbjct 613 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGG 554 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| || || || ||||| || || |||| ||||| || || || Sbjct 553 ATACCTTCTTTATCTTGGATCTTTGC-CTTAACGTTTTCAATAGTGTCTGATGGCTCGAC 495 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| | ||| ||||| || || || || || || || || ||||||||| Sbjct 494 GTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATA 446 >seq18786 Length=1170 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| || || Sbjct 751 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 810 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| ||| Sbjct 811 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 870 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || || || || ||| Sbjct 871 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 930 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 931 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 981 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 295 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG--G 352 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| || |||||| | || | | ||||| ||| || Sbjct 353 ACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTG 412 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| | || ||| || || |||| || || || || | Sbjct 413 GGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAA 472 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || || || || || || || ||||||||| Sbjct 473 CATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 522 >seq5463 Length=1496 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 868 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 809 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| || ||||| | || | | ||||| ||| ||| Sbjct 808 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 749 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | || || Sbjct 748 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 690 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 689 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 641 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| ||| | Sbjct 412 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG--G 355 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| || Sbjct 354 ACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTG 295 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| || ||| |||| || || || || | Sbjct 294 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAA 235 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 234 CGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 182 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || |||||||| ||||| ||||| || |||| ||| || Sbjct 1094 CCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGA-TCTTTCTGGATGT-GTAGTCTGAA 1037 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||| || || ||| | || | | ||||| ||| ||| Sbjct 1036 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 977 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | || || Sbjct 976 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 918 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 917 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 869 >seq22269 Length=1399 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| ||| | Sbjct 421 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG--G 364 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| || Sbjct 363 ACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTG 304 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| || ||| |||| || || || || | Sbjct 303 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAA 244 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 243 CGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 191 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || |||||||| ||||| ||||| || |||||||| || Sbjct 877 CCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 818 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||| || || ||| | || | | ||||| ||| ||| Sbjct 817 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 758 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | || || Sbjct 757 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 699 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 698 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 650 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 1105 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG--G 1048 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| || |||||| | || | | ||||| ||| || Sbjct 1047 ACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTG 988 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| | || ||| || || |||| || || || || | Sbjct 987 GGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAA 928 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || || || || || || || ||||||||| Sbjct 927 CATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATA 878 >seq2750 Length=4552 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 14939 AACCATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGT 14998 |||| || | ||||||| | ||| || || || || || || || |||||||| |||| Sbjct 4180 AACCTTGACCACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGT 4239 Query 14999 TGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTG 15056 |||||| | || || |||| ||||||| || | || ||||| | || | | ||| Sbjct 4240 TGTAAT--CAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTG 4297 Query 15057 TTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116 ||| || ||||| ||||| ||||| ||| ||| || || |||| || ||||| Sbjct 4298 TTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATC 4357 Query 15117 GCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || | ||||| || ||||| |||| ||| || || || || | ||| Sbjct 4358 AGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4417 Query 15177 ATTT 15180 ||| Sbjct 4418 TTTT 4421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357294593145455