Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq22269 91.5 1e-13 seq18786 91.5 1e-13 seq5463 91.5 1e-13 >seq22269 Length=1399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 625 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 566 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || ||||| ||||| |||||||| || || Sbjct 565 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTG 506 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| || || ||||| | || || || || Sbjct 505 GCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCAGTG 446 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 445 AGGGTCTTCACGAAGATTTGCAT 423 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || ||||||||||| ||||| || || ||| Sbjct 424 ATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 365 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || || | ||| || || ||| | || | || ||| || || || Sbjct 364 GACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGT 305 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | |||||| || | ||| Sbjct 304 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCA 245 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 244 ACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 195 >seq18786 Length=1170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 547 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 606 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || ||||| ||||| |||||||| || || Sbjct 607 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTG 666 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| || || ||||| | || || || || Sbjct 667 GCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCAGTG 726 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 727 AGGGTCTTCACGAAGATTTGCAT 749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || ||||||||||| ||||| || || || Sbjct 748 ATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 807 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| | || || | ||| || || ||| | || | || ||| || || || Sbjct 808 CTAAGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGT 867 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | |||||| || | ||| Sbjct 868 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCA 927 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 928 ACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 977 >seq5463 Length=1496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 616 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 557 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || ||||| ||||| |||||||| || || Sbjct 556 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTG 497 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| || || ||||| | || || || || Sbjct 496 GCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCAGTG 437 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 436 AGGGTCTTCACGAAGATTTGCAT 414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 844 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 785 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || || || ||||| || ||||| || ||| Sbjct 784 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTT 725 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| || |||| |||||| || | || | || || ||||| Sbjct 724 GCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTA 665 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 664 AGGGTCTTGACGAAGATTTGCAT 642 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || ||||||||||| ||||| || || ||| Sbjct 415 ATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 356 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || || | ||| || || ||| | || | || ||| || || || Sbjct 355 GACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGT 296 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | |||||| || | ||| Sbjct 295 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCA 236 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 235 ACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451876848155480