Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq18508 205 1e-47 seq2801 122 1e-22 >seq18508 Length=3287 Score = 205 bits (226), Expect = 1e-47 Identities = 750/1147 (65%), Gaps = 57/1147 (5%) Strand=Plus/Minus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCT-ACCTCC--AA 111584 ||||||||| ||| || ||||||||| ||| || | || || |||| |||| | || Sbjct 2458 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 2400 Query 111585 AGACTGG--ATGGTGTC-TTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATC 111641 ||| ||| | || |||| || |||||| ||||| | ||| | || || Sbjct 2399 AGA-TGGCAACCAAATCCTTGAGAGA----CCACAGCACATGCTTATGAGAGTAAGTATT 2345 Query 111642 GGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATG--TC--CCG 111697 ||||| ||| ||||| |||| || | || ||||| ||||| |||| || | | Sbjct 2344 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 2285 Query 111698 TGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAAT 111757 |||| | |||| || || ||||| || || ||| |||| ||||||| ||| | || Sbjct 2284 TGGTTTACTCAT----GCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGAT 2229 Query 111758 GTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGATTCAATCAATGGCATTTACGGCA 111813 | |||| || | || |||| ||| || || || || || |||| |||| | | Sbjct 2228 G---AGTTCTTGC-TTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAA 2173 Query 111814 CTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACA---TCC 111870 || | | || ||| ||||||||| |||||||||||||| | | || ||| Sbjct 2172 CTTTAAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC 2114 Query 111871 ATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTA 111930 ||||| ||||| | || || ||||||||||| || | ||| |||| | | Sbjct 2113 --GATGTAAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGA 2056 Query 111931 TTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC--- 111987 |||||||| | || || || | ||| || | || || | ||| ||| | Sbjct 2055 TTCCAATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAA 1996 Query 111988 GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTG 112047 | |||||| || |||| |||||| |||| ||||||||||| |||||| || |||||| Sbjct 1995 GAAAGGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTT 1936 Query 112048 AGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCT 112107 | | | || || ||| | || ||| | | || || |||| |||||| | Sbjct 1935 AACTCAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTT 1876 Query 112108 GGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTC 112167 ||| ||||||||| ||||||| |||||||| | | || ||||| ||||| | |||| Sbjct 1875 GGACTCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTC 1816 Query 112168 CAGA-CAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || | || || || || || | | | ||||||||||||||| || |||| Sbjct 1815 CAAATGAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATC 1757 Query 112227 AAGTACGA-------GGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTG 112279 |||| || || || | |||| ||||| | | || || || | | || | Sbjct 1756 GAGTATGAAACCACTGGTAG-AGGTCGCAAGACTGTTAAG--GCTAGATG--GCTCTGGG 1702 Query 112280 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGC 112339 | | || | ||||||||| |||||||||||| || ||||||||||||||||| || Sbjct 1701 GTTA--AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGC 1644 Query 112340 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTAC 112399 || || ||| || | | ||| | || || |||||||| ||||| || || Sbjct 1643 TTGCAATAGAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCAC 1584 Query 112400 AGAAATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 112458 || ||| | ||||||| ||| | |||||| |||||| ||||| || || || || | Sbjct 1583 TGAGATCGTCGAATTTACCAGTC-CAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTG 1525 Query 112459 CTCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAA 112517 || | | | ||| || | | |||| || ||||||||| || | || | Sbjct 1524 CTTTAAATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTAC 1466 Query 112518 GTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 112577 || || || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 1465 GTGACCAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTT 1406 Query 112578 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTC 112637 ||| | || || ||| | |||||| | |||||||| | |||||| |||| | Sbjct 1405 CCTGAAGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGTCTAAGGATTT 1346 Query 112638 GCGGATG 112644 || |||| Sbjct 1345 GCAGATG 1339 >seq2801 Length=1577 Score = 122 bits (134), Expect = 1e-22 Identities = 184/255 (72%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 |||||| || ||||| |||||||| | |||| | ||| | | ||||| || || Sbjct 862 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA-TCCCAGTTGTAACTAAGAAGGCTGA 804 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || || Sbjct 803 ATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTTT 747 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || | | ||||| ||||||||||| || ||||||||| | || | ||||| ||||| Sbjct 746 CGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAA 687 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 ||| || ||||||||||||||| |||||| || ||||| || || | ||||| || | Sbjct 686 GCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTAT 627 Query 102317 CCACCAAGAGTTTGC 102331 ||| || ||||| Sbjct 626 GCACACTGACTTTGC 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620568879221360