Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5401 129 7e-25 seq18508 84.2 3e-11 seq2801 82.4 9e-11 >seq5401 Length=3445 Score = 129 bits (142), Expect = 7e-25 Identities = 502/781 (64%), Gaps = 11/781 (1%) Strand=Plus/Plus Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328 || || ||| | || |||| || || ||||| ||||| |||| || ||| | | Sbjct 1421 TTCACGTATCTAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAG 1480 Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 ||||| || | ||| || ||||||||||||||||| ||| || | |||||| || Sbjct 1481 GTGTACTCGATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGG 1540 Query 110389 TTCGATTTGGAGTT-GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || ||| ||| || || |||||| || | ||||||||| || |||||||| | || Sbjct 1541 TTGCTCTTGCTGTTAGCGTG-ATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTG 1599 Query 110448 TGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTC 110507 ||| | | |||||| | ||||| | || | ||| | | | |||| Sbjct 1600 TGATTCAATAATGGCTTCCCATAGTTTTTGAGCTTTCATTGTTTTTCTGCCAATTCCTTA 1659 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 | ||| ||||| || || | | || ||||||| || | || || | || ||||| Sbjct 1660 TTGCTCATACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTT 1719 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || | || ||| ||||| || | ||| | ||| | ||| || ||||||||||| || Sbjct 1720 GGCTTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAG 1779 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 || |||||||| | || | || | ||| | | || || | ||| || || Sbjct 1780 ATCTGGAATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATT 1839 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 | ||| | | || || | || ||| | |||||||||||| | || | ||||| Sbjct 1840 CTTTCTTAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAA 1899 Query 110748 GGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 || ||||| | | ||| | |||| ||||| | || || |||||||||| || Sbjct 1900 TGAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCT 1959 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT--TATTG 110862 |||||| || | | |||| |||||||| || ||| | || ||| | || Sbjct 1960 GAGCATGGGTACGAGACCATTACTGTGACCATTAGTGCCCTTGAT--GTAACTGCCAGTG 2017 Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC-ACA 110921 || | |||| ||| | | || ||| | |||||| || | || ||| || | Sbjct 2018 GCTCTGATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCGATG 2077 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 ||| | || ||| |||| ||||| | || || || |||| | || || ||||| Sbjct 2078 TTCT-TAAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCA 2136 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 | ||||| | || ||| || || |||||||| | ||||| || |||||| |||| Sbjct 2137 ACTTGACATTTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAA 2196 Query 111042 C 111042 | Sbjct 2197 C 2197 >seq18508 Length=3287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/275 (67%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 ||||| | ||| | ||||| | || | ||||| || ||||||| || || ||| || Sbjct 1815 GGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTC 1874 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || |||||||||| | | | |||||| | ||| || || | || Sbjct 1875 CAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGT 1934 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 | | ||||| |||||| | |||||||||||| | ||||||||||| | |||||| Sbjct 1935 TAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTT 1994 Query 110758 C---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 | | ||| | | | || || | ||| ||| ||||||| ||| | | ||| ||| Sbjct 1995 CTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGA 2054 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 || | ||||| || | || |||||||| || || Sbjct 2055 ATCAATCCATTTGAATATCCGTTTGTACCTCTGAT 2089 >seq2801 Length=1577 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || | || ||||||||||| |||| || || |||||||| || | ||| Sbjct 630 CCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTC 689 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || ||| || |||||||||||||| | | |||||| Sbjct 690 TTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAA 749 Query 119634 GCGAATAGACGCTCAGCAAA 119653 || | ||| | |||||| || Sbjct 750 GCAATTAGTCTCTCAGCGAA 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588811359121400