Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5401 181 1e-40 seq18508 131 2e-25 seq2801 107 2e-18 >seq5401 Length=3445 Score = 181 bits (200), Expect = 1e-40 Identities = 672/1045 (64%), Gaps = 25/1045 (2%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || |||||||||| ||| | ||| || |||||||||| ||| || || ||| | Sbjct 1260 CATCAGCCAGACCTTGAATACCGATACCGATTGGTCTGTGTCTCATGTTTGAGTTTTTGG 1319 Query 106338 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394 | ||| || ||||| || || | ||||||| || ||| | || |||| | Sbjct 1320 CT---TCATCGCATGGATAGAAGTTGCCATCAATGATTCTGTTCAAGTTAATGGTGATTT 1376 Query 106395 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 106454 | || | || |||||||| ||||| || ||| | | || || || || Sbjct 1377 GATAAGTAACTTTGTGAAGTTTCTCATAGTCGAAAACACCA------TCCTTCACGTATC 1430 Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 | || || | || || || | ||||||||||| ||||| |||||||| | Sbjct 1431 TAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGA 1490 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||| || ||||||||||||||||| || || || | ||||||||||| ||||| Sbjct 1491 TAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGC 1550 Query 106575 TGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||| || | ||||||||| | |||||| || || || || || | ||||| | | | Sbjct 1551 TGTTAGCGTG-ATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 106634 ATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCTCCGCCTCGT 106691 || || | ||| | | ||| | || || | || | ||| | ||| | Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCT--TTCATTGTTTTTCTGCCAATTCCTTATTGCTCAT 1667 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 |||| || ||||| ||||| || |||| || | ||| |||| || || | || Sbjct 1668 ACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGT 1727 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || |||||||| | ||| | || | ||| || | ||||||||| || ||||||| Sbjct 1728 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAA 1787 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 |||| || | |||| | ||||| | || || | ||| || || || || Sbjct 1788 TCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1847 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 | |||||| || | || ||| ||||||||||| || | || | |||| || |||| Sbjct 1848 GTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCT 1907 Query 106932 TTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 ||| | || |||| | ||||| | || || | || || || | ||||| | Sbjct 1908 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGG 1967 Query 106989 GAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 | | | ||||| ||| |||||||| || ||| || | | ||||||| | Sbjct 1968 GTACGAGACCATTACTG--TGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGAT 2025 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | || | || || | ||| ||||| | ||||| || || | | |||| Sbjct 2026 GTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCGATGTTCTTAAG 2085 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 || |||||||||||||||||||||| ||||| | | ||||||||||| ||||| Sbjct 2086 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACAT 2145 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 | || | || ||||| |||||||| | || || || || ||| ||||| | | Sbjct 2146 TTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTC 2205 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||| || ||| || || | | | ||||| || || | |||||| || | | Sbjct 2206 ACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGA 2265 Query 107287 CACACGCATAAACATGTATTGGGGT 107311 ||| | ||| ||||||| ||| ||| Sbjct 2266 CACTCTCATCAACATGTGTTGTGGT 2290 >seq18508 Length=3287 Score = 131 bits (144), Expect = 2e-25 Identities = 419/639 (66%), Gaps = 26/639 (4%) Strand=Plus/Plus Query 106709 TCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-TCTGGACAGAAAAGA 106765 ||||||||||||||| | || | || || ||||| || || | |||||| | ||| Sbjct 1770 TCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCATTTGGACACATGAGA 1826 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 | ||| | || | ||||| | |||||||||| |||||| |||| || | | Sbjct 1827 GTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAG 1886 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 || || |||||| | | |||||| | ||| || || || | | |||||| || Sbjct 1887 AAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCG 1946 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 106942 |||||| ||||||||||| |||| |||||| |||| || |||||||| | ||| Sbjct 1947 TAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCA 2006 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 ||| || || || | || ||| | || || || | ||||||||| | |||| | Sbjct 2007 CCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTT 2066 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGC 107059 || | || ||||| || | || || | | ||||| ||||| ||| || | Sbjct 2067 GAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACTGAG- 2123 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | || ||||| ||||| ||||||||| ||| | | | |||| || | ||| Sbjct 2124 ACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATA 2183 Query 107120 CCGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 || | || ||||| || || ||| || | ||| ||| |||| ||||| ||| | Sbjct 2184 CCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT---CATCTAAGGTTT 2239 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235 |||||| |||| || || || ||||| || || ||| | ||| ||| |||| Sbjct 2240 TGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAA 2299 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 ||||| ||||| || | || |||| |||||| || || || || || | ||| Sbjct 2300 ATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAATACTTACTCTCAT 2359 Query 107296 AAACATGTATTGGGGTGTTTCCATGA---GGATGCCATC 107331 || ||||| || ||| | || | || || ||||||| Sbjct 2360 AAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 2398 >seq2801 Length=1577 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || |||| ||||| || |||||||||||| || ||| Sbjct 612 GCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCT 671 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 672 GGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATG 731 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAA 117452 ||||| | | || || |||| || | ||| |||||| |||| || | ||| Sbjct 732 CCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAAT 787 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTT 117479 ||| || || ||||||| |||||||| Sbjct 788 CCACTTAATGGCCCATTCAGCCTTCTT 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589815878242120