Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq379 122 1e-22 >seq379 Length=3625 Score = 122 bits (134), Expect = 1e-22 Identities = 188/266 (71%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||| |||| |||||||||| | || | | |||| |||||| | ||||||| Sbjct 2318 GGTGAAATGGGAGTTGATATTGCAATTGGATCTGTATAAAGATTTGGTGTACCTATGGCC 2259 Query 153792 TATGGAGGTCCTCATGCTGCAT-TCT---TTGCAACAACAGACAAGTATAAGAGAAAGAT 153847 ||||| ||||| ||| | | | | | |||||| ||| | | ||||||||||| Sbjct 2258 TATGGTGGTCCCCATCCAGGTTATATGGCTTGCAA----AGATGAATTCAAGAGAAAGAT 2203 Query 153848 ACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGC 153907 || || | || | ||| ||| | ||| ||||| | ||||| |||||| | || Sbjct 2202 GCCAGGTCGTCTTATCGGTGTTTCAATTGATGCCCAAGGTGACAAAGCTTACAGAATGGC 2143 Query 153908 ACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGC 153967 || || || ||||| ||||||||||| |||||||| |||||| ||||| ||||| || Sbjct 2142 TCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAACATTTGCACTGC 2083 Query 153968 TCAGGCACTGCTGGCTAATATGTCTG 153993 ||| || || || ||||| || |||| Sbjct 2082 TCAAGCCCTTCTTGCTAACATTTCTG 2057 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 153215 AGGATACTATGGAACCATTACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 153272 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 2835 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 2778 Query 153273 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 153332 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 2777 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 2718 Query 153333 TTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCT 153392 |||| || | | |||| | | || || | || | | | |||| || ||| Sbjct 2717 CTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACTCGACGTCTCAAATGCTTCT 2658 Query 153393 CTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAA 153442 || || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 2657 CTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 2608 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 155367 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 155426 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 575 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 516 Query 155427 TTAGGAACTATGATGGTAGAACCCACAGAGTCTGA 155461 |||| | | ||| | || || || |||||||| Sbjct 515 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579050888301920